Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0992 ATGACCAGCTCTTCCGCTGCCGCTCGCAAGGCTCTGAGTAAGATTGCCTGCAATAGGCTTCAGAAGGAACTTGTGGAATGGCAGGTCAATCCTCCCGCTGGTTTCAAACATAAAGTCACCGATAATCTTCAAAGGTGGGTTATTGAAGTGACTGGCGCTCCTGGTACACTTTACGCCAATGAAACCTACCAACTTCAGGTCGACTTTCCCGAGCACTACCCCATGGAAGCTCCACAGGTCATATTTTTGCACCCCGCACCACTGCATCCCCATATCTATAGCAATGGGCATATTTGTTTAGATATACTGTATGATTCATGGTCCCCGGCCATGACAGTTAGTTCTATCTGTATCAGCATTCTCTCAATGCTTTCAAGCTCGACTGTAAAGCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGTAGATCTCCCAAGGAGACAAGGTGGTGGTTCCATGACGATAAAGTATAA 486 0.4671 MTSSSAAARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVTGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0992 161 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Dere09g0992 161 SMART ubc_7 18 161 - -
Dere09g0992 161 FunFam probable ubiquitin-conjugating enzyme E2 16 13 161 - -
Dere09g0992 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 15 137 - -
Dere09g0992 161 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Dere09g0992 161 SUPERFAMILY UBC-like 7 126 IPR016135 -
Dere09g0992 161 Gene3D Ubiquitin Conjugating Enzyme 15 161 IPR016135 -
Dere09g0992 161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 161 IPR000608 -
Dere09g0992 161 CDD UBCc 17 117 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0992 Dere-ChrDere09 12873196 12875824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0992 1 112 Miscellaneous Gene Families AT2G33770 26.957 3.21e-07 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0992 09 12873196 12875824 Dere09g0992 09 12873196 12875824 ECH