Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0901 ATGGTGCACAGCGCCTACGATTGTTTCGAACTTATCGACAAGTGCCCGTCTAAGATCGAAGCCGTCGAATCTTACGGCTCAAAACTCCTCCTGGGCTGCTCCGATGGCTCCCTCCGAATATATGCTCCAGAATTATCTGATTCCGATCGGTCTCCTTCGGCCGATCACCACGCTCAGGAGCTGCGTAAGGAAACCTACGTTCTCGAAAGAAACTTGACTGGCTTTGCGAAGAAGCCTGTCGTATCAATGGAGGTATTGGAATCCAAGGAGCTACTTCTCTCACTTTCCGAATCTATCGCGTTTCACCGTCTTCCGAATTTTGAAACCATAGCAGTCATCACCAAGGCCAAGGGCGCCAATGTGTTCTGCTGGGATGACCGAAGAGGTTTCTTATGCTTCGCGAGGCAAAAGAGGGTCTGTATATTCAGACACGATGGTGGCAGAGGATTTGTGGAGGTGAAAGAATTTGGTGTCTCAGACGTGGTGAAGTCGATGTCTTGGTGCGGTGAAAATATATGTCTGGGGATTAGAAGAGAATATGTAATTTTGAATGCTACAAATGATGCGTTGTCTGAGGTATTTACTTCTGGAAGACTAGCGCCACCCTTAGTGGTCTCTCTTCCCTCAGGGGAACTACTTCTTGGAAAGGAGAAAATTGGGGTCTTTGTGGACCAAAATGGGAAACTTCTTCCGGAAGGCAGGATTTGTTGGTCAGAGGCCCCTGCAGAAGTTGTAATCCGTAAACCATATGGTATAGCTCTGCTGCCAAGATTTGTGGAGGTTCGATCTCTTCGAGATCCATTTCCACTGATACAGACTGTTGTTCTTCGTAATGTTCGTCATCTTCGCCAAAGCAACAATTCTGTGATTCTCGCATTAGATAATTCTGTTCATGGCCTCTTCCCTGTTCCTCTTGGAGCCCAGATTGTCCAATTAACAGCATCTGGTGACTTTGAAGAAGCTCTGTCATTGTGCAAACTCCTCCCACCTGAAGATTCAAATCTTCGTGCTGCAAAGGAGGGTTCTATCCATATAAGGTATGCTCACTATCTTTTTGAAAATGGGAGCTATGAGGAGGCAATGGAACATTTTCTGGCTTCCCAAGTAGATATAACTTATGTGCTTTCTCTGTATCCATCTATTATTGTTCCGAAGACAACCACTGTTAATGAGCCAGAGAAGTTGGTGGACATTTCTTTGGATGCTTCACATCTCTCCAGGGGTTCTTCAGGTCTGTCAGATGACATGGAACCCCCACCACCACCACATATGTCAGAATCTGATGCAGCACTTGAATCCAAAAAGATGAGTCATAATACGCTTATGGCTCTCATAAAGTTTTTGCAGAAGAAGAGATATAGTGTTATTGAGAAGGCCACTGCTGAGGGAACTGAGGAGGTCGTTTTAGATGCAGTTGGGGATAACTTAGTATCCTATAACAGTAGTAGGTTTAAGAAAACAAATAAGGGACGTGGTAATGTTCCAGTTAGTTCAGGAGCTCGGGAGATGGCTTCAGTATTGGATACTGCACTTCTCCAAGCGTTGCTTCTTACTGGACAGTCTTCCTCAGCTTTAGAACTACTGAGAGGTCTTAACTATTGTGATTTGAAGATATGTGAAGAGATACTTCGAAAAAGCAACAATAATGTTGCTTTATTAGAACTTTACAAGTGCAATTCAATGCACCGAGAAGCTCTTGAGCTTCTTCACCAATTAGTGCAAGAGTCAAAGTCAAACCCATCTGAGGTTACACATAGGTTCAAGCCTGAGGCAATTATTGAGTATCTCAAGCCTCTTTGTGGTTCAGACCCCATGCTAGTTCTGGAGTTCTCTATGCTTGTTCTTGAAAGCTGCCCAACACAAACTATTGAACTCTTTCTGTCTGGAAATATTCCAGCAGATATGGTGAACTCCTATTTGAAGCAACATTCTCCGAACATGCAGGCTACTTACTTGGAACTCATGCTTGCAATGAATGGGAGCGCCATCTCTGGAAATTTGCAAAATGAAATGGTACAAATCTATCTTTCAGAAGTACTTGAGTGGCATGCAGATTTAAATGCTCAAAAGAAATGGGATGAGAAAGCTTTCTCCCCAACAAGGAAGAAATTAGTGTCTGCTTTAGAGAGTATATCAGGATACAATCCAGAAGCTTTATTGAAATGTCTTCCACCAGATGCTTTATATGAAGAGCGTGCTATATTGTTGGGAAAAATGAACCAACATGAATTGGCACTATCTTTATATGTTCATAAGCTTCATGTTCCCGAATTGGCATTGTCTTATTGTGATCGGGTGTATGATTCTACACATCATCCATCAGCAAAATCTCCCACAAACATATACCTAACTCTTCTGCAAATCTATTTAAATCCACGAAGGACAACCAACAATTTCGAAAAGAGAATCATGAATCTATTATCCCCTCAGAATGCAAGCATTCTGAAGGTTAGCTCTTTGACATCAATAAAATCTAAAGGAGGCCGAGGAAGTAAGAAAATTGCTGCAATAGAGGGTGCAGAGGAGACAAAAGTTAATTTGAGCAGCACTGACAGTAGCCGGAGTGATGGTGATGTGGATGAATTTAGTGAGGAAAGTGGCACTACTATCATGCTTGATGACATCCTTGATTTGTTGAGCCGCAGATGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTCTTACCAAGAGAGACTAAACTACAGAACTTGCTTCCATTTCTGGGGCCTCTTATGCGAAAATCTAGTGAAATGTACCGTAATTGCTCAGTGATCAAGAGCTTGAGACAGAGTGAGAATCTTCAGGTTAAAGACGAACTCTATAATCAGAGAAAGGCTGCTGTGAAGATAACCGGTGACAGCATGTGTTCCCTTTGTCATAAGAAGATAGGGACAAGTGTATTTGCAGTCTACCCCAATGGAAAAACTCTCGTGCACTTCGTCTGTTTCAGAGATTCGCAGAGCATGAAAGCTGTGGCCAAAGGGTCGTCATTGAGGAAGCGATGA 3006 0.4301 MVHSAYDCFELIDKCPSKIEAVESYGSKLLLGCSDGSLRIYAPELSDSDRSPSADHHAQELRKETYVLERNLTGFAKKPVVSMEVLESKELLLSLSESIAFHRLPNFETIAVITKAKGANVFCWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVSDVVKSMSWCGENICLGIRREYVILNATNDALSEVFTSGRLAPPLVVSLPSGELLLGKEKIGVFVDQNGKLLPEGRICWSEAPAEVVIRKPYGIALLPRFVEVRSLRDPFPLIQTVVLRNVRHLRQSNNSVILALDNSVHGLFPVPLGAQIVQLTASGDFEEALSLCKLLPPEDSNLRAAKEGSIHIRYAHYLFENGSYEEAMEHFLASQVDITYVLSLYPSIIVPKTTTVNEPEKLVDISLDASHLSRGSSGLSDDMEPPPPPHMSESDAALESKKMSHNTLMALIKFLQKKRYSVIEKATAEGTEEVVLDAVGDNLVSYNSSRFKKTNKGRGNVPVSSGAREMASVLDTALLQALLLTGQSSSALELLRGLNYCDLKICEEILRKSNNNVALLELYKCNSMHREALELLHQLVQESKSNPSEVTHRFKPEAIIEYLKPLCGSDPMLVLEFSMLVLESCPTQTIELFLSGNIPADMVNSYLKQHSPNMQATYLELMLAMNGSAISGNLQNEMVQIYLSEVLEWHADLNAQKKWDEKAFSPTRKKLVSALESISGYNPEALLKCLPPDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDRVYDSTHHPSAKSPTNIYLTLLQIYLNPRRTTNNFEKRIMNLLSPQNASILKVSSLTSIKSKGGRGSKKIAAIEGAEETKVNLSSTDSSRSDGDVDEFSEESGTTIMLDDILDLLSRRWDRINGAQALKLLPRETKLQNLLPFLGPLMRKSSEMYRNCSVIKSLRQSENLQVKDELYNQRKAAVKITGDSMCSLCHKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVAKGSSLRKR 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0901 1001 Pfam CNH domain 26 282 IPR001180 -
Dere09g0901 1001 MobiDBLite consensus disorder prediction 406 430 - -
Dere09g0901 1001 Pfam Vacuolar sorting protein 39 domain 1 507 615 IPR019452 -
Dere09g0901 1001 ProSiteProfiles Citron homology (CNH) domain profile. 16 289 IPR001180 -
Dere09g0901 1001 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 610 797 IPR000547 GO:0006886|GO:0016192
Dere09g0901 1001 Pfam Vacuolar sorting protein 39 domain 2 876 984 IPR019453 -
Dere09g0901 1001 SUPERFAMILY WD40 repeat-like 25 177 IPR036322 GO:0005515
Dere09g0901 1001 Pfam Region in Clathrin and VPS 635 768 IPR000547 GO:0006886|GO:0016192
Dere09g0901 1001 PANTHER CNH DOMAIN CONTAINING 1 989 IPR032914 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0901 Dere-ChrDere09 11917312 11926042 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0901 09 11917312 11926042 Dere09g0901 09 11917312 11926042 ECH