Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0877 ATGAAATGCCCGTACTGCGCGGCGGCTCAGGGGCGGAGCGCCACCACCAACTCCGGCCGCTCCATAACGGAGTGCATATCTTGCGGGCGAGTAGTTGAAGAGCGACAATCCCACCCTCACCATCTCTTTCACCTGCGCGCCCAAGACAACCCTCTCTGTCTCGTCACTTCCGACCTCCCCTCCCTCCAACCCTTCCATCAAAACCACGACGACGATGACCCCTTCGAGCCCACCGGTTTTATCACTGCCTTCTCCACTTGGTCCCTCGAGCCCAGCCCTCTCTACCTCCAGTCCTGTCTGTCCTTCTCCGGCCACCTCGCTGAGCTCGAGAGGGCTCTCGAATCGTCTTCCTCTTCATCCTCCTCTTCCACATCGTCCTCTTCATCTTCATCGACGGTTGTGGTTGATAATTTGAGGGCGTACATGCAGATTATTGATGTAGCGTCGATACTTGGGTTGGACTATGATATCTCGGACCATGCGTTTCAATTATTCAGGGATTGTTGTTCAGCTACTTGTTTGAGAAACCGGAGCGTTGAAGCGCTTGCCACTGCTGCTCTTGTTCAGGCAATTAGAGAGGCTCAAGAGCCCAGAACCCTACAGGAAATTTCAATTGCAGCCAATGTACCACAAAAGGAGATTGGGAAATACATCAAGATACTGGGAGAGGCTTTGCAGCTAAGTCAACCTATTAACAGTAATTCTATATCAGTCCATATGCCTAGATTTTGTACACTTCTACAACTCAATAAGTCTGCTCAGGAACTGGCCACCCACATAGGAGAGGTCGTGATCAACAAATGCTTCTGCACTCGCAGGAATCCTATTAGCATTTCCGCCGCTGCTATATATTTGGCTTGCCAACTTGAAGACAAACGCAAAACTCAGGCAGAGATCTGCAAGGTGACTGGTCTTACTGAAGTCACACTCCGGAAAGTGTACAAGGAACTTTTAGAGAATTGGGATGATTTGCTTCCCTCTAATTACACCCCAGCTGTTCCTCCAGAGAGGGCATTCCCTACTACTGTAATTGCTTCAGGTCGTTCATCTGCTGCTAAGGTTGATGCAATAGAAATTAATTCTTCTCTGGACAGAGAGAAATTACTAGAAATTAAACCTAGCAAACCAAATGAGGTTCCAGTCATGGTACATCAGCTCAGGGAGAAAGATGATGTTGAAAGTAAAAGCAATGTTCGCACAACCCATTCGACACTGAATCAGCAGTCAGCTTTCTGGCAATCCCAGCTTCCCATTGGAGCATCTAGTCATAAAACTACAGGAGAAAAAAATCAGAATGTTTTACAAGGAATGGACGTTGATGGACTACAGCATAACCACCAACAGCCTGAACAGAAGTCTGAAGATACAAATGGTGTTAATTCTTTTCAAAAACCAACCCAACTTAGCAGTCCTTCTGCCTCAAATGCTAGCTCTGTCATGAAGCCTTTTTTGACTCCGCCTTCATCTGGGCCTCCAATTTGA 1482 0.475 MKCPYCAAAQGRSATTNSGRSITECISCGRVVEERQSHPHHLFHLRAQDNPLCLVTSDLPSLQPFHQNHDDDDPFEPTGFITAFSTWSLEPSPLYLQSCLSFSGHLAELERALESSSSSSSSSTSSSSSSSTVVVDNLRAYMQIIDVASILGLDYDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSSAAKVDAIEINSSLDREKLLEIKPSKPNEVPVMVHQLREKDDVESKSNVRTTHSTLNQQSAFWQSQLPIGASSHKTTGEKNQNVLQGMDVDGLQHNHQQPEQKSEDTNGVNSFQKPTQLSSPSASNASSVMKPFLTPPSSGPPI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0877 493 CDD CYCLIN_TFIIB_archaea_like_rpt2 235 321 - -
Dere09g0877 493 FunFam Transcription initiation factor IIB 238 335 - -
Dere09g0877 493 MobiDBLite consensus disorder prediction 444 493 - -
Dere09g0877 493 PRINTS Transcription initiation factor IIB signature 210 225 IPR000812 GO:0006352|GO:0070897
Dere09g0877 493 PRINTS Transcription initiation factor IIB signature 305 319 IPR000812 GO:0006352|GO:0070897
Dere09g0877 493 PRINTS Transcription initiation factor IIB signature 184 203 IPR000812 GO:0006352|GO:0070897
Dere09g0877 493 PRINTS Transcription initiation factor IIB signature 239 257 IPR000812 GO:0006352|GO:0070897
Dere09g0877 493 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Dere09g0877 493 PRINTS Transcription initiation factor IIB signature 273 289 IPR000812 GO:0006352|GO:0070897
Dere09g0877 493 SUPERFAMILY Cyclin-like 236 334 IPR036915 -
Dere09g0877 493 FunFam Transcription initiation factor TFIIB 138 229 - -
Dere09g0877 493 Gene3D - 138 229 - -
Dere09g0877 493 Gene3D - 238 334 - -
Dere09g0877 493 MobiDBLite consensus disorder prediction 386 410 - -
Dere09g0877 493 SUPERFAMILY Cyclin-like 139 229 IPR036915 -
Dere09g0877 493 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 372 IPR000812 GO:0006352|GO:0070897
Dere09g0877 493 MobiDBLite consensus disorder prediction 452 484 - -
Dere09g0877 493 Pfam Transcription factor TFIIB repeat 238 319 IPR013150 GO:0017025
Dere09g0877 493 Pfam Transcription factor TFIIB repeat 140 221 IPR013150 GO:0017025
Dere09g0877 493 SMART cyclin_7 238 319 IPR013763 -
Dere09g0877 493 SMART cyclin_7 142 223 IPR013763 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0877 09 11689582 11693922 Dere09g0877 09 11689582 11693922 ECH