Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0833 ATGCTTATTCGGCTGTTCTTCTCCAAGTTGAACACGACTTTCAGATTATCCCATCAAGCTCGATCCTATGGCCGTGACCCTTTTCCCAGTAAAGTTTCTCACTACCTTTACCGTGCCAAACTCATAGACTCTATTCGAGTCTGTCTGCGATCCAATCGTCCCAACTCACTCCCTCATTTTCTAAACGACCGTCTCCTCGACTCTTTCGTAGTCACTCAGGCGCTGCGTTCTGCCCCCTCTGCAAATTCTGTTCTCTCCCTTGTTGAAGCCCTTGAAAAAATTCCTGGTTTTTCGCACACCCAGAATACCCTCCATGCCCTTGCTACTGTGCTTGCCAAGTCGCACCGAAGTGCAGAACTCAAATCCCTCATTAATGCTATCACTGCTGGAAGATTCGGCAATGTTCGTATCAACTTTATGAATCTCATGCAGTGGCATGCTGCAGCTGGGGATCTTGAGTCAGTTCTTGAGGTTTGGGACGAGTATAGACTCGCCGCCAATAAGCGTGCCTGCACTGAATCGTATAACATTGTTATGGCTCTGTACGCACAAAAGGGTAAGGACTCTGAGGCAGTCAAGACTTTCTACAGGATGATTGATGAAGGGGCAATTCCGAACTGTAGAACTTATACAATAATAATCGAACACCTTGTAAATTCTGGAAAATTATTTGAAGCCATGAAGGTCTTCAGCGTACTACCTTTAATGCGGATCAAGCGCACTTTGAAGCAGTACTCAATTCTTATTGAGAGTTTCATTGGTATCAAACGGTTTGAAGAAGTCAAAACCTTACTCAATGAAATGCAGGTTGATGGAATATTGCCTAGTCGAGCCATGTGTTTGTCACTGCAGCAGATTCAAGAGGAAGGATTTCTTGAGGACATTGACGAGTTCTTCAAAGAAAGTTTATCAGATGAGAGAATCAAGAACGTAGGATATTCTATTGACAGTAGTGATGATGATGATGAGGATGAAAATGAGAATGCAAGTCATGCTTGTCAATGTGAGGATGGAAAACAGTTAAAACCGTGGCTGGACCCACGGGCTTTGGCAAGTGCCTTACAGAATTGGGGTCCTGATGAGGTATCAGCCCTGGAAGGTGCAAACTTTGTGTGGACAACAAGGTTGGTCTGCAAGATCCTGAGGAATTTCAATTCACCAGAAACTGCTTGGAATTTCTTCTGCTGGGTTGCTTATCAACCTGGATTTACTCATGATATATACACAGTACAAAGGATCATGACTCTTCTAGCACGTCATGGATGCGCAGAATTGGTTGATAGGCTCATCTCCAAGATCAGAATGGAGGGAATGAGACTTCCATTCAGCACCATAAGGCTAATCATTGACTTCTATGGAATTTCAAAGAATGCTGATGCTGCTCTGAAAGTTTTCAATGCTGATCGAACACTTTGTGGGCCCGTATCAAAATTTAATCTAATGCTTTTGTATTCCTCTCTTCTAAGAGCATTAACCAAGTGTGGAAGGAATTCTGATGCCTTGGATATACTTGATGAGATGGTTTTGAATGGCATTTTCCCAGATATCCAGACGTTTTCTGGTCTAATTCACCATTTTGCACGCCTTGGAGACATAAAAACGGTGCAGAAGCTCTTTACAATGGTTCGACAGAGTGATTTAGAGCCGGATGCTTATCTGTTTAAGGTACTAATCCAAGGTTATTGCAAGTCAGAACGAGCAGCACTAGCATGGAGGATATTTGAAGACATGAAGAATTCAGGTTTGATGCCTGATTCTGCCACTAAAGAGTTGCTGGTGAAGAGCCTTTGGAAAGAAGGGAGAAGGAGGGAAGCTGCAGCTGTGGAAGAGAGTTGTGAGGAAATAAATGATGTCCTTCCGCTTACATTGCGTGGTCATATATGGTCCGTCAGCTCTGCTGATCTTACAAGAGTTTATAATATTTATTCTACTAGTTTTTTGTTGTCTGATGCGTTTTAG 1959 0.4303 MLIRLFFSKLNTTFRLSHQARSYGRDPFPSKVSHYLYRAKLIDSIRVCLRSNRPNSLPHFLNDRLLDSFVVTQALRSAPSANSVLSLVEALEKIPGFSHTQNTLHALATVLAKSHRSAELKSLINAITAGRFGNVRINFMNLMQWHAAAGDLESVLEVWDEYRLAANKRACTESYNIVMALYAQKGKDSEAVKTFYRMIDEGAIPNCRTYTIIIEHLVNSGKLFEAMKVFSVLPLMRIKRTLKQYSILIESFIGIKRFEEVKTLLNEMQVDGILPSRAMCLSLQQIQEEGFLEDIDEFFKESLSDERIKNVGYSIDSSDDDDEDENENASHACQCEDGKQLKPWLDPRALASALQNWGPDEVSALEGANFVWTTRLVCKILRNFNSPETAWNFFCWVAYQPGFTHDIYTVQRIMTLLARHGCAELVDRLISKIRMEGMRLPFSTIRLIIDFYGISKNADAALKVFNADRTLCGPVSKFNLMLLYSSLLRALTKCGRNSDALDILDEMVLNGIFPDIQTFSGLIHHFARLGDIKTVQKLFTMVRQSDLEPDAYLFKVLIQGYCKSERAALAWRIFEDMKNSGLMPDSATKELLVKSLWKEGRRREAAAVEESCEEINDVLPLTLRGHIWSVSSADLTRVYNIYSTSFLLSDAF 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0833 652 PANTHER OS01G0167750 PROTEIN 11 647 IPR044175 -
Dere09g0833 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Dere09g0833 652 Gene3D Tetratricopeptide repeat domain 364 473 IPR011990 GO:0005515
Dere09g0833 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Dere09g0833 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Dere09g0833 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Dere09g0833 652 Pfam PPR repeat 245 273 IPR002885 -
Dere09g0833 652 NCBIfam pentatricopeptide repeat 174 207 IPR002885 -
Dere09g0833 652 NCBIfam pentatricopeptide repeat 484 516 IPR002885 -
Dere09g0833 652 NCBIfam pentatricopeptide repeat 554 585 IPR002885 -
Dere09g0833 652 NCBIfam pentatricopeptide repeat 245 276 IPR002885 -
Dere09g0833 652 Pfam PPR repeat family 484 528 IPR002885 -
Dere09g0833 652 Pfam PPR repeat family 549 596 IPR002885 -
Dere09g0833 652 Pfam PPR repeat family 172 218 IPR002885 -
Dere09g0833 652 Gene3D Tetratricopeptide repeat domain 475 630 IPR011990 GO:0005515
Dere09g0833 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Dere09g0833 652 Gene3D Tetratricopeptide repeat domain 72 339 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0833 487 623 Glycosyltransferase AT1G05670 25.180 3.98e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0833 09 11191772 11193730 Dere09g0833 09 11191772 11193730 ECH