Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere09g0783 | ATGGTCTCCGAATCGGAGCTTATCGGCCGGCTACGGGAGTTTCTTCGGAGCTCTGACCTCAACACTACCACCACTGCCACTCTTCGCAGGCAGTTGGAGAAGGATTTTGGAATCAATTTGTCGGATAGGAAGGCATTCATTAGGGAACAGGTGGACTTGTTCCTTCAAAGCGAGCATGAGCAACCTGAAGAACCGGAAGACGAAGAAGATAAAAAGGACGGCGCTCAGCCTGAGCCTGAACCTGAGGAAAGCGAGGATTCGGATGATGAAATGCAAGACGATGAAGATAAAGTGAAGCGTGCCCGGAATGGGAAGGATCAAGGACGATCTAAAAAGTCAGGAAATGAGGTAAGAAAAAAAGGTGGTGGTTTTTGCAAATTATGTAGCCTGTCTCCACAACTTCAGGAATTCATTGGAGCACCAGAAATGGCTAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATTAGGGAGAAGAATTTGCAAGATACAAATAACAGGCGGAATATAATTTGTGATGAACCATTGCGTGCCCTTTTTGGTGTTGATTCCATCAACATGTTTCAAATGAATAAAGCATTGTCAAAGCATATCTGGCCATTGGATTCAGACGATGTTATCCAGGTGAAGTCTGCACCAAAGGATAAGCAGAAGAAGCAAGAGAGAGAAAACGATCCGGAGGAACCAAAGAGAAAGGAGAAACGACAGAAGGGAGGAAAATCAGGTTTTCTTGCTCCTCTTCAGCTATCTGATGCCCTTGTAAGCTTCCTTGGTACTGGAGAAAGTGCATTATCAAGGGCTGATGTCATTAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATTTGTGATGAGAAGCTGAAAGAACTCTTCGATGTTGACTCCTTCAATGGCTTCACAGTTACGAAACTACTGGCACCTCATTTCATAAAAGCAGAGCAGTGA | 975 | 0.439 | MVSESELIGRLREFLRSSDLNTTTTATLRRQLEKDFGINLSDRKAFIREQVDLFLQSEHEQPEEPEDEEDKKDGAQPEPEPEESEDSDDEMQDDEDKVKRARNGKDQGRSKKSGNEVRKKGGGFCKLCSLSPQLQEFIGAPEMARTEVVKQLWAYIREKNLQDTNNRRNIICDEPLRALFGVDSINMFQMNKALSKHIWPLDSDDVIQVKSAPKDKQKKQERENDPEEPKRKEKRQKGGKSGFLAPLQLSDALVSFLGTGESALSRADVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFDVDSFNGFTVTKLLAPHFIKAEQ | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere09g0783 | 324 | SUPERFAMILY | SWIB/MDM2 domain | 240 | 322 | IPR036885 | - | |
| Dere09g0783 | 324 | Pfam | SWIB/MDM2 domain | 127 | 198 | IPR003121 | - | |
| Dere09g0783 | 324 | Pfam | SWIB/MDM2 domain | 246 | 319 | IPR003121 | - | |
| Dere09g0783 | 324 | ProSiteProfiles | SWIB/MDM2 domain profile. | 242 | 321 | IPR003121 | - | |
| Dere09g0783 | 324 | FunFam | Upstream activation factor subunit | 118 | 206 | - | - | |
| Dere09g0783 | 324 | ProSiteProfiles | SWIB/MDM2 domain profile. | 123 | 200 | IPR003121 | - | |
| Dere09g0783 | 324 | CDD | SWIB-MDM2_like | 247 | 319 | - | - | |
| Dere09g0783 | 324 | SUPERFAMILY | SWIB/MDM2 domain | 119 | 202 | IPR036885 | - | |
| Dere09g0783 | 324 | Gene3D | - | 1 | 59 | - | - | |
| Dere09g0783 | 324 | MobiDBLite | consensus disorder prediction | 56 | 117 | - | - | |
| Dere09g0783 | 324 | Gene3D | SWIB/MDM2 domain | 118 | 206 | IPR036885 | - | |
| Dere09g0783 | 324 | MobiDBLite | consensus disorder prediction | 211 | 239 | - | - | |
| Dere09g0783 | 324 | Pfam | DEK C terminal domain | 2 | 55 | IPR014876 | - | |
| Dere09g0783 | 324 | ProSiteProfiles | DEK C-terminal (DEK-C) domain profile. | 1 | 56 | IPR014876 | - | |
| Dere09g0783 | 324 | SMART | swib_2 | 243 | 324 | IPR019835 | - | |
| Dere09g0783 | 324 | SMART | swib_2 | 124 | 203 | IPR019835 | - | |
| Dere09g0783 | 324 | MobiDBLite | consensus disorder prediction | 211 | 242 | - | - | |
| Dere09g0783 | 324 | MobiDBLite | consensus disorder prediction | 93 | 117 | - | - | |
| Dere09g0783 | 324 | SUPERFAMILY | DEK C-terminal domain | 3 | 56 | - | - | |
| Dere09g0783 | 324 | CDD | SWIB-MDM2_like | 128 | 198 | - | - | |
| Dere09g0783 | 324 | PANTHER | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D | 6 | 203 | - | - | |
| Dere09g0783 | 324 | Gene3D | SWIB/MDM2 domain | 237 | 324 | IPR036885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere09g0783 | Dere-ChrDere09 | 10772329 | 10777094 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SWI/SNF-BAF60b | Dere09g0783 | SWIB | 2.3e-27 | No_clan |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere09g0783 | 09 | 10772329 | 10777094 | Dere09g0783 | 09 | 10772329 | 10777094 | ECH |