Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0491 ATGGACTCACAACAGAGCAATCTATTCGAGACCGCTTCGCAACCCGACACTGGCAACGATGCTTACACTTTCCTCGAATTTAACACTCAGGGGGAGGATTTCGACTATCCCGAGTTCCGTGACCCGATTAGGTCATCGGTGGCTTGGCCCACTCCGTCCGATTCCCTGGTTGACCCCACGGAACGTGGTGGTGGAGGTGGAGCGGGTTCTGATCACCAGTCCGATGCCTCACCTGTTTCAGCAGCTCCAGGAAGCGCCACTAAAAGCCGGGCATCCGGGTCGGGCGGCAGCGGGAACAGCCAGATGGTTGACACCCTGGCTGCTGGAATGAGCGGGTTGAATTTTGAGGACCCTGGGGATGATGACAATTATGAATTTGGTAAAGGAGATTTCACTGAACATGCTTGCCGGTATTGTGGGGTATCGAATCCTGCATGTGTTGTGAGGTGTAATGTGCCTTCATGTCGCAAATGGTTTTGTAACTCACGGGGCAACACGTCGGGTTCACATATCGTAAATCACCTGGTTCGAGCAAAACACAAGGAAGTCTGTCTTCACAAAGATAGTCCTTTGGGAGAAACAATTCTTGAATGCTACAACTGTGGTTGTCGCAATGTGTTTCTCCTCGGATTTATATCTGCCAAGACAGAAAGTGTAGTTGTTCTTCTTTGTCGAGAACCTTGCTTGAGTGTTAATGCATTGAAAGATATGAATTGGGATCTCAGTCAGTGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATACCATCTGAACAGGAGCAGTTGAGGGCTCGTCAGATAAGTGCTCAGCAAATTAATAAGGTGGAAGAGCTTTGGAAAACAAATCCTGATGCTTCTCTTGAGGACCTTGAGAAACCTGGTGTAGATGATGAACCTCAGCCTGTGGCTTTAAAATACGAAGATGCATATCAGTATCAAAATGTTTTTGCACCACTCATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCTCAAAGCAAGGACAATGTTACAATTCGATGGGACATTGGTCTTAATAAAAAGCGCATTGCATACTTTGTATTCCCAAAGGAAGATAATGAGTTGCGTCTTGTACCTGGTGATGAATTACGATTGCGTTATTCTGGAGATGCTGCACATCCAGCATGGCAATCAGTGGGGCATGTGATTAAGCTAACTGCACAAGAGGAAGTTGCTCTTGAGCTTCGTGCAAATCAGGGGGTTCCAGTTGATGTAAATCACGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCGGTGGATGAGACAAGTGTGAGCGGGTATATTTACCATCACTTATTGGGTCACGAAGTTGAGGTTCAGATGGTGCGTAATACATTGCCTCGTCGCTTTGGTGCACCAGGGCTCCCAGAGCTCAATGCATCTCAAGTTTTTGCAGTTAAGAGTGTTCTTCAGAGGCCAATTAGTTTGATCCAAGGTCCTCCTGGAACTGGTAAGACTGTAACTTCTGCAGCAATTGTTTATCACATGGCAAAACAAGGTCAGGGACAGGTTCTGGTTTGTGCACCTAGTAATGTGGCTGTAGATCAGCTTGCCGAGAAGATAAGTGCTACTGGGTTGAAGGTTGTTAGACTTTGTGCGAAGTCAAGGGAAGCTGTGAGTTCTCCGGTTGAGCACTTAACACTTCATTATCAGGTTCGAAATCTTGACACATCTGACAAGAGTGAACTTCACAAGTTACAACAGCTGAAAGATGAACAAGGTGAACTTTCCAGTAGTGACGAGAAAAAGTACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATTTGCTGTACTTGTGTTGGTGCTGGTGATCCTCGGCTGGCCAATTTTAGATTTCGTCAGGTACTTATTGATGAGTCTACACAGGCAACAGAACCTGAATGCCTTATACCTTTGGTTCTTGGGGTCAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTCATTATGTGCAAGAAAGCAGCTCGTGCTGGGCTTGCACAGTCTCTTTTTGAACGCCTTGTTTTACTTGGTGTTAAACCAATTAGATTGCAGGTTCAATACCGTATGCATCCATCTCTCTCTGAGTTTCCTTCAAATAGCTTTTATGAAGGCACTCTACAAAATGGAGTCACTGTTAATGAAAGGCAATTATCAGGAATTGATTTTCCCTGGCCTGTGCCCAATCGTCCCATGTTCTTTTATGTTCAGATGGGACAAGAGGAGATAAGTGCAAGCGGAACATCTTATTTAAATCGAACTGAGGCTGCAAATGTTGAAAAGATTGTGACTACGTTCTTAAGAAGTGGTGTAGTTCCTAGTCAGATCGGTGTGATAACACCTTATGAGGGACAAAGAGCTTATATTGTGAACTATATGTCACGAAATGGTGCCCTCAGACAGCAACTTTACAAGGAGATTGAGGTTGCCAGTGTCGATTCCTTTCAAGGAAGGGAGAAAGATTACATCATTCTGTCATGTGTAAGGAGTAATGAGCATCAGGGCATTGGATTCCTGAATGATCCTCGGAGGCTCAATGTTGCTTTGACCAGAGCTAGATATGGTATCGTTATTTTGGGAAACCCTAAAGTTCTGAGCAAGCAGCCTCTGTGGAATAGCTTGTTGACGCACTATAAGGAACATGAGTGCCTGGTTGAAGGACCTTTAAATAATTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAGAAGATCTACAATGATAGAAGGCTTTTTTATGGTGGTGGGCCAGGAGTTGTGGCCAATGATAATTTTGGGTCAGTTGGCTCTGGTCCAACTTCAGATCGAAAGAGCAACCGGGGTAGGGGATCTTATATGCCTCCTGGTCCATCAAATGGAACCCATAAACCTGGCGTGCATCCTACTGGTTACCCTATTCCAAGGGTTCCCTTGCCACCTTTTCATGGTGGTCCCCAATCTCAGCCATATGCCATTCCAACTCGTGCAGCTGTACATGGGCCTGTTGGGGCAGTCCCTCATGTACCACCTCTAGGAAGTCGGGGTTTTGGTGCTGGACGTGGTAATTCTGGTGCCACGGTTGGCAATCATCTCCCACACCAGCAAGGCACACAGCAGTCTGTTGGAAATCTTGGATCTACCTTTAACTTCCCAGCTCTAGAAAATCCCAACAGCCAGCCATCTGTTGGTGGTCCATTGTCTCAACCTGGGTTTGCCAATAATATGCCAGTCCAAGGGGCAGCCCAATCATTTAGAGATCAGTTTTCTGTGCCAGGAATGTCCCAGGATTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTCCCTTATAATGTTACTGATTTCTCCACACAGGCTTCTCAGAGTGGATATGCTGTTGATTATGTTACACAAGGAGCACAAGGTGGATTCCCTGGAAACTTTTTAAATCAGAACTCTCAAGCTGGATATTCACGTTTTGGTTCTGGGAATGATTTCATGTCTCAGGACTACATGACACATGGATCGCAAGGTCTTTTCACTCAGGTTGGCTTTAATGATCCCTTGCAAGATGATGCACCACAGAGCCAATTCAGTGTGGCCAATGCCAACCCTCTCCAGTCTCAGGGCCTGATGAATTCTCTCTACTCCCAGCCTTTTGCTCACTACAACACACAGCCGCTGAACATGCAGGCTTCCCAGCCACAGCCTCAGGGTCAGAGCTCTCAAAATCAGAAAATACACTACAACGGTTGA 3807 0.4571 MDSQQSNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSSVAWPTPSDSLVDPTERGGGGGAGSDHQSDASPVSAAPGSATKSRASGSGGSGNSQMVDTLAAGMSGLNFEDPGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRNLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQLSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGGGPGVVANDNFGSVGSGPTSDRKSNRGRGSYMPPGPSNGTHKPGVHPTGYPIPRVPLPPFHGGPQSQPYAIPTRAAVHGPVGAVPHVPPLGSRGFGAGRGNSGATVGNHLPHQQGTQQSVGNLGSTFNFPALENPNSQPSVGGPLSQPGFANNMPVQGAAQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMTHGSQGLFTQVGFNDPLQDDAPQSQFSVANANPLQSQGLMNSLYSQPFAHYNTQPLNMQASQPQPQGQSSQNQKIHYNG 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0491 1268 Gene3D - 570 622 - -
Dere09g0491 1268 Pfam AAA domain 583 687 IPR041677 GO:0004386
Dere09g0491 1268 MobiDBLite consensus disorder prediction 953 993 - -
Dere09g0491 1268 FunFam regulator of nonsense transcripts 1 homolog 340 428 - -
Dere09g0491 1268 MobiDBLite consensus disorder prediction 1 103 - -
Dere09g0491 1268 Pfam AAA domain 697 892 IPR041679 -
Dere09g0491 1268 PANTHER DNA2/NAM7 HELICASE FAMILY 241 999 IPR045055 -
Dere09g0491 1268 MobiDBLite consensus disorder prediction 956 970 - -
Dere09g0491 1268 Gene3D - 340 428 - -
Dere09g0491 1268 Gene3D - 448 718 IPR027417 -
Dere09g0491 1268 MobiDBLite consensus disorder prediction 1240 1268 - -
Dere09g0491 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 915 IPR027417 -
Dere09g0491 1268 Pfam Type III restriction enzyme, res subunit 490 560 IPR006935 GO:0003677|GO:0005524|GO:0016787
Dere09g0491 1268 Gene3D - 719 930 IPR027417 -
Dere09g0491 1268 MobiDBLite consensus disorder prediction 1 26 - -
Dere09g0491 1268 Pfam RNA helicase UPF1, 1B domain 339 428 IPR040812 -
Dere09g0491 1268 Pfam RNA helicase (UPF2 interacting domain) 134 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Dere09g0491 1268 CDD ZBD_UPF1-like 135 257 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Dere09g0491 1268 CDD DEXXQc_UPF1 484 719 - -
Dere09g0491 1268 MobiDBLite consensus disorder prediction 73 103 - -
Dere09g0491 1268 CDD 1B_UPF1-like 340 427 IPR040812 -
Dere09g0491 1268 FunFam Regulator of nonsense transcripts 1 719 930 - -
Dere09g0491 1268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 625 IPR014001 -
Dere09g0491 1268 CDD SF1_C_Upf1 720 909 IPR047187 -
Dere09g0491 1268 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 128 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0491 Dere-ChrDere09 7824253 7835293 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0491 09 7824253 7835293 Dere09g0491 09 7824253 7835293 ECH