Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0470 ATGGGCTGTTTCTACTCCAAGGTAGTAAGGAAAGGGAAGCTCCCTATGAGGGAGGACCCTATAATTCTTGCAGCAGAGACAGCTTTCAGCGTTAGCGAGGTTGAAGCACTATTTGAGCTTTTTAAGAGCATCAGCAGTTCTGTCACTGACGATGGATTAATCAGCGAGGAAGAGTTTCAGTTGGCAATTATCAAGAATAATAAAAAGGATAATCTCTTTGTAAGTCAGATCTTTGATCTGTTTGACGTTAAGAAGAAGGGAGCCATTGACTTTGGTGACTTCGTTAGATCACTAAGTGTCTTCCACCCCAAGGCATCACAACAAGACAAGATAAATTTTTCATTTAAGATTTATGACTTGGAAAATACAGGCTATATAGAGCGCCAAAAGGTCAAACAAATGTTAATAGCTATTCTTTCAGAGACTGAAGTGAAGTTGGCTGATGAGACAATAGAAACTATTCTTGATAAGACTTTCTTGGATGCTGACATGAACCAAGATGGGAAAATAGACAAGCTCGAATGGCAAAACTTCGTTTCTAAGAATCCCTCACTGTTAAAAGTCATGACCCTACCCTACCTCAGGGATATAACAACCACGTTCCCAAGTTTTATATTCAATTCTGAGGTTGATGAAATTACAAAGTGA 648 0.3904 MGCFYSKVVRKGKLPMREDPIILAAETAFSVSEVEALFELFKSISSSVTDDGLISEEEFQLAIIKNNKKDNLFVSQIFDLFDVKKKGAIDFGDFVRSLSVFHPKASQQDKINFSFKIYDLENTGYIERQKVKQMLIAILSETEVKLADETIETILDKTFLDADMNQDGKIDKLEWQNFVSKNPSLLKVMTLPYLRDITTTFPSFIFNSEVDEITK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0470 215 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Dere09g0470 215 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
Dere09g0470 215 Pfam EF-hand domain pair 109 179 IPR002048 GO:0005509
Dere09g0470 215 FunFam calcineurin B-like protein 3 19 212 - -
Dere09g0470 215 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Dere09g0470 215 SMART efh_1 110 138 IPR002048 GO:0005509
Dere09g0470 215 SMART efh_1 154 182 IPR002048 GO:0005509
Dere09g0470 215 SMART efh_1 73 101 IPR002048 GO:0005509
Dere09g0470 215 PRINTS Recoverin family signature 124 142 - -
Dere09g0470 215 PRINTS Recoverin family signature 170 190 - -
Dere09g0470 215 PRINTS Recoverin family signature 77 98 - -
Dere09g0470 215 PANTHER CALCINEURIN B 2 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
Dere09g0470 215 SUPERFAMILY EF-hand 24 204 IPR011992 -
Dere09g0470 215 Gene3D - 20 213 - -
Dere09g0470 215 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0470 Dere-ChrDere09 7555298 7559158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0470 1 214 EF-hand Containing Proteins AT4G17615 73.832 1.37e-117 332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0470 09 7555298 7559158 Dere13g0296 13 4144575 4147770 CCT
Dere09g0470 09 7555298 7559158 Dere09g0470 09 7555298 7559158 ECH