Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0272 ATGGCTTCCTCAGCGCAAATGATACTGGTGACCGGAGGGGCCGGCTTCATCGGCTCTCACACCGTCGTTCAGCTTCTCAAAGGTGGCTTCAACGTCACCATCATCGATAATTTAGATAATTCCGTCATGGAAGCCGTGAATCGGGTTCGCGAGTTGGTTGGTCCTCAGCTTTCTAACAACCTCCAATTCGTCCAAGGTGATCTTAGATATATGGCTGACTTGGAGAAACTGTTTTCCAAAACAAAATTTGACGCGGTGATCCACTTTGCTGGTCTAAAAGCCGTAGGAGAAAGTGTTCAAAACCCTCTCCGGTATTTTGAGTATAATTTAATCGGCTCAATCAATCTCTACCAAGTTATGAAAAAGTACAACTGTAAGAAGATGGTCTTCTCATCATCTGCAACCGTATATGGTGAAGCTAAAAAGATACCCTGTGTTGAGGATTCTGAGTTAATGGCCGTGAGTCCTTATGGACGGACCAAGCTGATACTGGAAGACATAGCTCGAGACCTTCAGAAGGCAGAGCCAGAATGGGGTATCATTTTACTGAGATACTTCAATCCAGTAGGAGCCCACGAAAGTGGCAAAATAGGTGAAGATCCAAGGGGCATCCCTAATAACCTCATGCCTTTCATACAGCAAGTAGCTGTTGGAAGATTACCCGAGCTTAACGTATTCGGTCTTGATTACCCTACGAAGGATGGCACTGCGGTTCGAGACTATATCCATGTGATGGATTTGGCAGATGGCCACATTGCTGCCCTGCGAAAGCTTTTCAATACAGAGAAAATAGGTTGTACGGCTTACAACCTGGGAACTGGTCGTGGTACGTCCGTGCTTGAAATGGTCGCAGCATTTGAAAAAGCTTCTGGAAAGAAAATTCCCCTTAAAAAGTGTCCAAGGAGGCCTGGAGATGCTGTTGCTGTTTATGCATCTACAGAGAAGGCTGAGAAAGAACTCGGGTGGAAGGCAAAATATGGTGTGGAGGAGATGTGCAGGGACCAATGGTGTTGGGCAAGCAACAATCCGTGGGGCTACCAAGGGAAGAAATAG 1053 0.4625 MASSAQMILVTGGAGFIGSHTVVQLLKGGFNVTIIDNLDNSVMEAVNRVRELVGPQLSNNLQFVQGDLRYMADLEKLFSKTKFDAVIHFAGLKAVGESVQNPLRYFEYNLIGSINLYQVMKKYNCKKMVFSSSATVYGEAKKIPCVEDSELMAVSPYGRTKLILEDIARDLQKAEPEWGIILLRYFNPVGAHESGKIGEDPRGIPNNLMPFIQQVAVGRLPELNVFGLDYPTKDGTAVRDYIHVMDLADGHIAALRKLFNTEKIGCTAYNLGTGRGTSVLEMVAAFEKASGKKIPLKKCPRRPGDAVAVYASTEKAEKELGWKAKYGVEEMCRDQWCWASNNPWGYQGKK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0272 350 CDD UDP_G4E_1_SDR_e 8 338 IPR005886 GO:0003978|GO:0006012
Dere09g0272 350 Gene3D - 8 279 - -
Dere09g0272 350 Gene3D - 197 339 - -
Dere09g0272 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 348 - -
Dere09g0272 350 FunFam UDP-glucose 4-epimerase 8 202 - -
Dere09g0272 350 FunFam UDP-glucose 4-epimerase 4 282 350 - -
Dere09g0272 350 NCBIfam UDP-glucose 4-epimerase GalE 7 343 IPR005886 GO:0003978|GO:0006012
Dere09g0272 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 347 IPR036291 -
Dere09g0272 350 Pfam GDP-mannose 4,6 dehydratase 9 334 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0272 Dere-ChrDere09 5480514 5483342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0272 8 323 Miscellaneous Gene Families AT4G00110 28.916 3.60e-26 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0272 09 5480514 5483342 Dere09g0272 09 5480514 5483342 ECH