Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0271 ATGACTTTCATACAAAACTTCCCCATAGTGTTCTCCCTCCTCGTGGCTCTCGTCTTCACTTCCACTCAGGCGGCCAGATTTGATGTCACAAACAGATGCCCCTACACCGTGTGGGCGGCAGCCGTGCCGGTCGGCGGCGGCAGACAGCTCAACTCCGGCGAGACGTGGAGCTTCGACGTGGCCGCCGGCACCGCAGGGGCTCGCATATGGGCCCGAACAAACTGCAACTTTGACGGGTCGGGTCGGGGACATTGCCAGACGGGTGACTGTGGAGGCCTGCTCAACTGTCAAGCCTATGGGTCACCTCCAGACACTCTTGCTGAATTTGCTCTAAACCAGTACAACAATATGGACTTCTACGATATCTCACTGGTCGACGGCTTCAATGTTCCGATGGAGTTCAGCCCCACGTCCAATGGGTGCACCCGCGCCATCCGATGCACCGCCGATATCAACGGCCAGTGCCCCAACCAGCTGAAAGCTGAAGGTGGCTGCAACAACCCCTGCACTGTCTTCAAGACCGACCAGTACTGTTGCAACTCTGGGAGCTGTGCACCCACTGATTATTCAAAATTCTTCAAGGATAGGTGCCCTGATGCTTACAGTTACCCCAAGGATGATGCCACCAGCACTTTCACTTGCCCCGGAGGAACCAACTATAGGGTTTCTATATTGAGATCATTCTTCAGTCCCTGTGGATTTGTAGAAGAGGGAGTGAAAATTCTGTCTTACAAAAAGCCAGAGAGATCTCTGCGATTCCTCTCGGATTCTGTACTTTTCAATTCATTATCTGCGATCCAAATATCGAAGATGCCTCAGGGAAGCCTTGAAGTTCTTCTGGTTAGTGCCAAGGGCCTTGAGAACACCGATTTTCTTAATAACATGGATCCTTATGTGATCCTCGTATGTCGTACTCAGGAGCAGAAAAGCAGTGTCGCATCAGGAAAAGGAAGTGAACCGGAGTGGAATGAGACTTTTGTTTTCAGCTTGACCGAAGGCGTTTCCGAACTCAAATTGAAGATATTGGACAGTGATTGCGGCAAAGACGATGATTTCGTGGGAGAAGCAATCATTCCGCTAGATGCTTTGTTCACTGAAGGAAGCATCCCACCCACCGTGTACAACGTTGTCAAGGATGAGGATTATCGTGGGGAAATTAAAGTTGGCCTCACTTTTACCCGAGAGGGGCGCAGCGAATATGCAGAGGAGGAAAACTTAGGTGGATGGAAGGAGTCTTACACAGATTAA 1248 0.5072 MTFIQNFPIVFSLLVALVFTSTQAARFDVTNRCPYTVWAAAVPVGGGRQLNSGETWSFDVAAGTAGARIWARTNCNFDGSGRGHCQTGDCGGLLNCQAYGSPPDTLAEFALNQYNNMDFYDISLVDGFNVPMEFSPTSNGCTRAIRCTADINGQCPNQLKAEGGCNNPCTVFKTDQYCCNSGSCAPTDYSKFFKDRCPDAYSYPKDDATSTFTCPGGTNYRVSILRSFFSPCGFVEEGVKILSYKKPERSLRFLSDSVLFNSLSAIQISKMPQGSLEVLLVSAKGLENTDFLNNMDPYVILVCRTQEQKSSVASGKGSEPEWNETFVFSLTEGVSELKLKILDSDCGKDDDFVGEAIIPLDALFTEGSIPPTVYNVVKDEDYRGEIKVGLTFTREGRSEYAEEENLGGWKESYTD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0271 415 ProSitePatterns Thaumatin family signature. 81 96 IPR017949 -
Dere09g0271 415 CDD TLP-P 27 222 - -
Dere09g0271 415 SMART C2_3c 275 372 IPR000008 -
Dere09g0271 415 SUPERFAMILY Osmotin, thaumatin-like protein 25 222 IPR037176 -
Dere09g0271 415 Pfam Thaumatin family 31 223 IPR001938 -
Dere09g0271 415 PRINTS Pathogenesis-related protein signature 118 134 IPR001938 -
Dere09g0271 415 PRINTS Pathogenesis-related protein signature 81 110 IPR001938 -
Dere09g0271 415 PRINTS Pathogenesis-related protein signature 46 55 IPR001938 -
Dere09g0271 415 PRINTS Pathogenesis-related protein signature 68 79 IPR001938 -
Dere09g0271 415 PRINTS Pathogenesis-related protein signature 216 225 IPR001938 -
Dere09g0271 415 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Dere09g0271 415 Gene3D Thaumatin 25 225 IPR037176 -
Dere09g0271 415 PANTHER OS03G0233200 PROTEIN 13 223 IPR001938 -
Dere09g0271 415 Gene3D C2 domain 272 394 IPR035892 -
Dere09g0271 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 270 393 IPR035892 -
Dere09g0271 415 ProSiteProfiles C2 domain profile. 262 373 IPR000008 -
Dere09g0271 415 ProSiteProfiles Thaumatin family profile. 24 222 IPR001938 -
Dere09g0271 415 Pfam C2 domain 274 367 IPR000008 -
Dere09g0271 415 SMART tha2 27 231 IPR001938 -
Dere09g0271 415 FunFam Thaumatin I 25 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0271 Dere-ChrDere09 5472386 5477747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0271 13 223 Receptor kinase-like Gene Family AT5G38280 36.134 1.37e-37 142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0271 09 5472386 5477747 Dere09g0271 09 5472386 5477747 ECH