Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0251 ATGTTGAACGTTTGTCACAATTGTGTAAAGCTCATCGCCGTAATCATCTTGTCAAAAATAGCTATGGATTACTCGCTAGATACTAAAGCCTTTGTTGATCACTCGAAAGCAGATATCACTGGACACTCTGGAAATGAGGTGAGAATTCTTTGTCCAATCACATTGGAAGAGCACAATGACCAAACTAGGAAATGGACAATTTGGAATCCCATTGACAGGAGCCAGGACTCTTCCCCTCTCAACTTCTGCTCTAATATTTGCTATTGTAAATTCTCTGAAGTTTTTACTCCTCCACCAATTCATTTAACCATGAGAGAAATCCTGCACATCCAAGCTGGTCAATGTGGTAACCAAATTGGAGGCAAATTTTGGGAGGTTATGTGTGACGAACATGGTATTGATGCCATTGGGAATTATGTAGGCAATTCCCATCTTCAACTTGAGAGGGTTAACGTTTACTACAACGAAGCAAGTGGTGGTCGCTATGTTCCGAGAGCTGTGCTGATGGACCTTGAACCAGGGACCATGGACAGCCTGCGTTCAGGTCCTTATGGAAGAATCTTCAGGCCTGACAACTTCGTGTTTGGCCAAAATGGCGCTGGAAACAACTGGGCTAAAGGCCATTACACCGAGGGAGCAGAGCTCATCGACTCTGTTCTGGACGTTGTTCGTAAAGAAGCAGAGAACTGTGATTGCTTGCAGGGCTTCCAAGTTTGTCATTCCCTGGGAGGCGGAACAGGGTCTGGAATGGGGACCCTGTTAATCTCAAAGATCAGAGAAGAGTATCCTGATAGGATGATGATGACTTTCTCGGTCTTCCCATCTCCTAAGGTCTCTGACACAGTCGTTGAACCCTACAATGCCACCCTCTCTGTTCATCAACTTGTTGAAAATGCCGATGAATGCATGGTCCTGGACAATGAGGCTCTCTATGATATCTGTTTCAGAACCCTCAAGCTCACAAATCCAAGTTTTGGTGATCTCAACCATTTGATCTCAACAACAATGAGTGGAGTAACATGTTGCCTTCGCTTTCCGGGCCAGCTCAACTCTGATCTCCGTAAACTAGCTGTTAACCTCATCCCTTTTCCACGCCTTCACTTCTTCATGGTTGGTTTTGCACCCTTAACATCTCGCGGTTCCCAAGAATACAGAGCCCTCACCATTCCTGAGCTTACTCAACAAATGTGGGATGCCAGAAACATGATGTGTGCAGCAGACCCAAGACATGGTAGATACCTGACTGCCTCGGCTATGTTCCGAGGTAAAATGAGCACTAAGGAAGTGGATGAACAGATGATAAACGTACAAAACAAGAACTCATCGTATTTTGTGGAATGGATACCACATAATGTAAAATCAAGTGTTTGTGATATTCCACCAACTGGGTTGTCCATGTCCTCCACGTTCATGGGGAATTCGACATCGATTCAAGAGATGTTTAGGCGTGTTTCAGAGCAATTCACAGTGATGTTTAAGAGAAAGGCTTTCTTGCATTGGTACACTGGAGAGGGTATGGATGAGATGGAGTTTACGGAGGCTGAGAGTAATATGAATGATTTGGTGGCTGAGTACCAACAGTATCAGGATGCAGCAGCAGAGGAAGATGAGGTTGATGAGGAGGAGGAAGGTATGCATGACTAA 1644 0.4483 MLNVCHNCVKLIAVIILSKIAMDYSLDTKAFVDHSKADITGHSGNEVRILCPITLEEHNDQTRKWTIWNPIDRSQDSSPLNFCSNICYCKFSEVFTPPPIHLTMREILHIQAGQCGNQIGGKFWEVMCDEHGIDAIGNYVGNSHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPYGRIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQEYRALTIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAAAEEDEVDEEEEGMHD 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0251 547 SUPERFAMILY Tubulin C-terminal domain-like 347 531 IPR008280 -
Dere09g0251 547 SUPERFAMILY Tubulin nucleotide-binding domain-like 104 346 IPR036525 -
Dere09g0251 547 FunFam Tubulin beta chain 477 537 - -
Dere09g0251 547 SMART Tubulin_4 150 347 IPR003008 GO:0005525
Dere09g0251 547 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 243 249 IPR017975 GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 Gene3D Tubulin/FtsZ, GTPase domain 104 365 IPR036525 -
Dere09g0251 547 PRINTS Beta-tubulin signature 414 432 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 255 267 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 211 229 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 348 361 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 515 533 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 333 342 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 368 384 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 144 161 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 432 446 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 450 473 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 315 327 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 191 202 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Beta-tubulin signature 480 491 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere09g0251 547 Pfam Tubulin C-terminal domain 364 485 IPR018316 -
Dere09g0251 547 PRINTS Tubulin signature 235 253 IPR000217 GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Tubulin signature 254 275 IPR000217 GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Tubulin signature 196 207 IPR000217 GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Tubulin signature 113 133 IPR000217 GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Tubulin signature 293 313 IPR000217 GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Tubulin signature 209 233 IPR000217 GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Tubulin signature 279 292 IPR000217 GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Tubulin signature 154 173 IPR000217 GO:0005874|GO:0007017
Dere09g0251 547 PRINTS Tubulin signature 473 501 IPR000217 GO:0005874|GO:0007017
Dere09g0251 547 Gene3D - 366 476 IPR037103 -
Dere09g0251 547 Gene3D Helix hairpin bin 477 533 IPR023123 -
Dere09g0251 547 CDD beta_tubulin 105 529 - -
Dere09g0251 547 FunFam Tubulin beta chain 367 476 - -
Dere09g0251 547 PANTHER TUBULIN 106 529 IPR000217 GO:0005874|GO:0007017
Dere09g0251 547 SMART Tubulin_C_4 349 486 IPR018316 -
Dere09g0251 547 FunFam Tubulin beta chain 104 365 - -
Dere09g0251 547 Coils Coil 511 538 - -
Dere09g0251 547 Pfam Tubulin/FtsZ family, GTPase domain 106 314 IPR003008 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0251 Dere-ChrDere09 5297354 5300540 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0251 09 5297354 5300540 Dere09g0251 09 5297354 5300540 ECH