Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0247 ATGGGGAATCGACGGTTCACTCAGGTCGCCACCAGCGACGATGAGGACGACGAAGCTCCACCTCGTACACAGCAGCAACGGCAACAACAGCGACAATCTTCCGCTTCGGATGAGAACCGGTCGAAGCAGCGTAAGAGGAAGAGGATGAAGCTTCAAGAGGAAGAAGATGAAGAGGAGGACGAGGAGGACAAGAAAAAGAAGAGAAAGTATAAAGACAAGGTGGAAGAGGGATCCCACAGTGTTGACGAAGAAGAGGAACAGCCTCAGGAGGACGCCAAGCCTATTGGCGATCCCATTAGGGTTTCAGGGAAGGGAAGAGGGAGGAGGAAGCATTTCGAGTCCTTTGAGTTCGATGGGAACCAATATACACTTGAGGATCCTGTACTTCTCGTGCCTGAGGATAAAGACCAAAAGCCATATGTGGCAATTATTAAGGACATTACACAATCCCAAAATGGCAGTATGATGGTGACAGGGCAGTGGTTTTATCGTCCTGAAGAAGCTGAAAGAAAGGGTGGTGGAAGCTGGCAATCGCGCGATACAAGGGAGCTGTTTTACAGTTTCCACCGTGATGAAGTTCCTGCAGAATCTGTTATGCACAAGTGTGTGGTTCATTTTGTTCCCATACACAAACAGCTTCCAAACCGCAAACAACATCCTGGTTTTATTGTGCAAAAGGTTTATGATACTGTAGAGAGAAAACTCTGGAAGTTAACCGATAAGGACTATGAGGATAATAAACAGCAAGAAATTGATGATCTTGTTCAAAAAACTCTAAAACGTATTGTTGATCTACCTGACATTGAGAATGAAGAAGCCCCTGCTGAACAGGACGATCAGATGAAGAATAAAAGAAGTTTTAGGAGAAGGAACATTTCCCCTCTCGATGTTTCAAGGGAGGAGGAGGCCACTCCAAAGAACGAACAGCATCTAAAGCCAGAAACACCTGGAAGTTGTGTAGCTAATGCCTCAGAGTATTATCAAATATTAGCAAATTTCAAGGTACTAACTGGAGATACCCATCGTGACAAATGGTTGGAGAGGTTGCTTCAACACATTCAGTATATGTGTAACTCTGATGAAAGCAAACAGAGGGATGACAAAGCAAAGGACAATTCTGATGCAATCAACAGTGGAAGCAATAATAGAATTTCATTGACAGCAAATGATTGTCAAGACAAGGATCAGAAGAGATCTGAGTCTTTTATTTGGCCAGATGCTGCTGTTCCAGCCATAGTTGCCCTGGAAAAAGCTTCACATGATGCCCTTTCCTCAGATTATCAGAAGTATAACCAAAAATTACGGCAATTGGTGTTTAATCTCAAGAACAATAGGCTAGCTCGCCGTCTATTAAATGGAGAGCTGGAACCTTCAAAAATATTGAATATGTCACCCATGGAATTGAAGGAGGGCTTGACTGCTGATGAATTAGCCAAGAAGGAGCCTGACGAATCACAGCACATGCAGATGACAGATGCCCGCTGCTCAAGATGCATGGAATGTAAGGTAGGAGTGAGGGATATTATCCATGCAGGACATGGCGACCGTTATCAGCTGGAATGTATTGCCTGTGGTAATTCCTGGTATGCCTCCCGAGATGAGGTGTCTTTGCTGACTATAGATGGATCGGATTCTACTAGGAGTGTAGGCACCGCACCATGGGCCACTGCCAAATTTGAAAGTGTCGAGAAGAAGCTGGTGAGTCCCCGTGAATCTGACAAGTCGTCTCACGACATCTTCAAGAAAACGAGCGAAGCATATATGCCAGTTTTGGAAGCCCAGAAGTCGTTTGGGAAATCTCGAAAAGATGAGAATATAGAAGTTACGAAACATGCTGATTAG 1842 0.4457 MGNRRFTQVATSDDEDDEAPPRTQQQRQQQRQSSASDENRSKQRKRKRMKLQEEEDEEEDEEDKKKKRKYKDKVEEGSHSVDEEEEQPQEDAKPIGDPIRVSGKGRGRRKHFESFEFDGNQYTLEDPVLLVPEDKDQKPYVAIIKDITQSQNGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDDLVQKTLKRIVDLPDIENEEAPAEQDDQMKNKRSFRRRNISPLDVSREEEATPKNEQHLKPETPGSCVANASEYYQILANFKVLTGDTHRDKWLERLLQHIQYMCNSDESKQRDDKAKDNSDAINSGSNNRISLTANDCQDKDQKRSESFIWPDAAVPAIVALEKASHDALSSDYQKYNQKLRQLVFNLKNNRLARRLLNGELEPSKILNMSPMELKEGLTADELAKKEPDESQHMQMTDARCSRCMECKVGVRDIIHAGHGDRYQLECIACGNSWYASRDEVSLLTIDGSDSTRSVGTAPWATAKFESVEKKLVSPRESDKSSHDIFKKTSEAYMPVLEAQKSFGKSRKDENIEVTKHAD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0247 613 SMART mid_6 374 478 IPR003618 GO:0006351
Dere09g0247 613 MobiDBLite consensus disorder prediction 275 309 - -
Dere09g0247 613 MobiDBLite consensus disorder prediction 37 53 - -
Dere09g0247 613 MobiDBLite consensus disorder prediction 61 80 - -
Dere09g0247 613 Pfam Transcription factor S-II (TFIIS), central domain 337 487 IPR003618 GO:0006351
Dere09g0247 613 SUPERFAMILY Elongation factor TFIIS domain 2 335 469 IPR036575 GO:0006351
Dere09g0247 613 ProSiteProfiles BAH domain profile. 120 239 IPR001025 GO:0003682
Dere09g0247 613 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 607 - -
Dere09g0247 613 MobiDBLite consensus disorder prediction 269 317 - -
Dere09g0247 613 SMART BAH_4 120 239 IPR001025 GO:0003682
Dere09g0247 613 MobiDBLite consensus disorder prediction 374 389 - -
Dere09g0247 613 Pfam BAH domain 121 237 IPR001025 GO:0003682
Dere09g0247 613 Gene3D - 104 329 IPR043151 -
Dere09g0247 613 MobiDBLite consensus disorder prediction 1 107 - -
Dere09g0247 613 ProSiteProfiles TFIIS central domain profile. 387 496 IPR003618 GO:0006351
Dere09g0247 613 Coils Coil 39 87 - -
Dere09g0247 613 CDD BAH_plant_3 102 248 - -
Dere09g0247 613 Gene3D - 330 470 IPR036575 GO:0006351
Dere09g0247 613 MobiDBLite consensus disorder prediction 360 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0247 Dere-ChrDere09 5219556 5224399 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0247 09 5219556 5224399 Dere09g0247 09 5219556 5224399 ECH