Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0221 ATGTCTTCGCCGAGCAAACGCCGAGAGATGGACTTGATGAAGCTGATGATGAGCGATTACGAGGTGGAGATGATCAATGATGGCATGCAGGAGTTTTTTGTGCATTTTCACGGGCCTAAAGACAGTCCTTATCAGGATGGTGTATGGAAGATAAGGGTAGAGCTACCTGATGCTTATCCTTATAAATCTCCATCCATTGGTTTTGTCAACAAAATATACCACCCTAATGTTGATGAAATGTCTGGCTCAGTTTGCTTAGATGTTATTAACCAGACCTGGAGTCCCATGTTTGACCTTGTTAATGTGTTTGAAGTATTTCTTCCCCAACTTCTTCTGTACCCTAACCCATCAGATCCATTGAATGGTGAAGCTGCTGCATTGATGATGCGTGATCATGCTGCATATGATCAAAGAGTCAAAGAATATTGTGAAAAGTATGCCAAGCCAGAAGATGTTGGGGCTTCCCAGGAGGAGAACTCTAGTGATGGGGAGTTGACTGAAGACGATTATGGCTCTAGTGATGAGGCAATTGCTGGGCAACCTGATCCTTAG 552 0.4366 MSSPSKRREMDLMKLMMSDYEVEMINDGMQEFFVHFHGPKDSPYQDGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDHAAYDQRVKEYCEKYAKPEDVGASQEENSSDGELTEDDYGSSDEAIAGQPDP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0221 183 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Dere09g0221 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Dere09g0221 183 CDD UBCc 7 143 IPR000608 -
Dere09g0221 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Dere09g0221 183 MobiDBLite consensus disorder prediction 146 183 - -
Dere09g0221 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Dere09g0221 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Dere09g0221 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Dere09g0221 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Dere09g0221 183 SMART ubc_7 4 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0221 Dere-ChrDere09 5013027 5015452 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0221 09 5013027 5015452 Dere09g0221 09 5013027 5015452 ECH