Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0216 ATGGGACACGGACACGGTGACAAAGGCCGACCCTTCAAAAAGTTCAAGGCCGCCGCTAAATTTGACGATCCCCGAAAAGGATTCGTCGACGACGATGATGTGTATATGGGGGACGATGGATATGATGATGACGGTGAGAAAGAAGCCAAACTCAAAGATTTTAGCAAATTAGAGCTAAAACAGGATCACGCGAATCGGCCTCTGTGGGCTTGTGGCAATGGTCGGATATTCCTCGAGACCTTCTCTCCTTTGTACAAACAAGCTTACGATTTCCTTATTGCCATAGCGGAACCCGTTTGCAGGCCGGAGTCAATGCACGAATACAACCTCACTCCACATTCCCTGTATGCTGCGGTTTCGGTTGGTCTTGAAACAGAAACTATCATATCAGTTTTGAACAAGTTATCCAAGACTATGCTTCCTAAAGAGATGATTAGATTTATAAAGGATTCTACTGCAAATTATGGCAAAGTGAAACTTGTACTTAAGAAAAATAGATACTTTATTGAATCTCCGTTTCCAGAGGTATTGAAGACATTGCTCAGGGATGAAGTTATTTCACGATCAAGGATCACTTCTGAGGGTGCACTTGGAGATGGATTTACCATCAGCAAAGCAGCAGGTGAAATTTCAGGCACTCATGATGAGTTGCTGAATGAAGCAGAAGTAGCAGCAGCTGCAGAAGAGAAAGAAACTCATTCATTTGAGATTGATCCTTCTCAGGTTGAAAATGTAAAGCAACGGTGTTTGCCAAATGCTTTAAATTATCCTATGTTGGAGGAGTATGACTTTAGAAATGATACAGTTAACCCTGACCTTGATATGGAACTTAAGCCTCAAGCACAGCCACGGCCATATCAAGAGAAGAGCCTGAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATCATAGTTCTGCCTTGTGGTGCTGGTAAGTCTCTAGTTGGTGTTTCTGCAGCCTGCCGTATAAAAAAGAGTTGCCTTTGTTTGGCAACAAATGCTGTGTCTGTGGACCAGTGGGCTTTTCAGTTTAAGCTATGGTCAACCATCCGAGACGAAAATATCTGTCGTTTTACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTGGTTGTGACCACATATAACATGGTTGCGTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTCCTCATGGATGAGGTACATGTGGTTCCGGCACATATGTTTCGGAAGGTCATTAGCCTCACTAAATCTCACTGCAAACTTGGGCTCACAGCCACTCTCGTGAGAGAGGATGAAAGGATTACAGATCTGAATTTTCTCATTGGTCCCAAGTTGTACGAAGCAAATTGGTTGGATCTAGTGAAAGGAGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCTATGACGAAAGAATTTTTTGCGGAGTATCTGAAGAAAGAGAACTCCAAGAAGAGGCAGGCACTTTATGTGATGAACCCAAATAAGTTCAGAGCATGCGAGTTTCTCATAAAATACCATGAAACACAGCGTGGCGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCGCTCACTGAGTATGCCATGAAACTTCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACAAGCATTTAAAACTAGCAAAGATGTCAACACTATATTCCTTTCCAAGGTGGGTGATAACTCAATTGACATTCCAGAGGCAAATGTGATCATTCAGATCTCTTCACATGCTGGGTCAAGGCGTCAAGAAGCCCAACGTCTGGGTCGTATTCTCAGGGCAAAGGGTAAGCTTCAGGATCGGATGGCAGGGGGTAAGGAGGAGTATAATGCATTCTTTTATTCTCTAGTGTCAATAGATACCCAGGAGATGTACTACTCAACCAAGCGGCAGCAATTTTTAATTGATCAGGGTTATAGCTTTAAGGTAATTACAAGCTTGCCTCCTGCTGGAGAAGAAGCTTCCTTGAGTTACTATCATCTTGAAGATCAATTGGCGCTTCTTGGAAAGGTCTTGAGTGCTGGTGACGATGCAGTTGGTCTAGAGCAATTAGAAGAAGATGCGGATGAAATAGCTCTTCGCAATGCCCGTCGTTCTACAGGATCAATGAGCGCAATGTCAGGTGCAAAGGGGATGGTTTACATGGAGTACAGTACTGGGCGTAACAAAGGTCAAGGACAGATCAAGAGTAAGCCAAAAGATCCAAATAAGCGACACTTTTTATTTAAAAGACGCTATGGCGCGCAATAG 2316 0.4266 MGHGHGDKGRPFKKFKAAAKFDDPRKGFVDDDDVYMGDDGYDDDGEKEAKLKDFSKLELKQDHANRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTMLPKEMIRFIKDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLRDEVISRSRITSEGALGDGFTISKAAGEISGTHDELLNEAEVAAAAEEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDENICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLIKYHETQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSIDTQEMYYSTKRQQFLIDQGYSFKVITSLPPAGEEASLSYYHLEDQLALLGKVLSAGDDAVGLEQLEEDADEIALRNARRSTGSMSAMSGAKGMVYMEYSTGRNKGQGQIKSKPKDPNKRHFLFKRRYGAQ 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0216 771 CDD SF2_C_XPB 475 639 - -
Dere09g0216 771 NCBIfam DNA repair helicase rad25 223 766 IPR001161 GO:0003678|GO:0006289|GO:0006367
Dere09g0216 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 714 IPR027417 -
Dere09g0216 771 FunFam Putative DNA repair helicase rad25 465 707 - -
Dere09g0216 771 MobiDBLite consensus disorder prediction 742 771 - -
Dere09g0216 771 SMART ultradead3 279 460 IPR014001 -
Dere09g0216 771 Gene3D - 273 464 IPR027417 -
Dere09g0216 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 456 IPR014001 -
Dere09g0216 771 Pfam Type III restriction enzyme, res subunit 282 438 IPR006935 GO:0003677|GO:0005524|GO:0016787
Dere09g0216 771 SMART helicmild6 539 617 IPR001650 -
Dere09g0216 771 Gene3D - 465 705 IPR027417 -
Dere09g0216 771 Pfam ERCC3/RAD25/XPB C-terminal helicase 464 712 IPR032438 -
Dere09g0216 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 677 IPR001650 -
Dere09g0216 771 FunFam Probable DNA repair helicase RAD25 273 464 - -
Dere09g0216 771 Pfam Helicase conserved C-terminal domain 68 191 IPR032830 -
Dere09g0216 771 CDD DEXHc_XPB 275 444 - -
Dere09g0216 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 458 IPR027417 -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 629 652 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 152 171 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 573 591 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 66 86 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 295 317 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 592 617 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 264 290 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 526 548 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 468 490 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 506 521 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 402 422 - -
Dere09g0216 771 PRINTS Xeroderma pigmentosum group B protein signature 720 739 - -
Dere09g0216 771 PANTHER RAD25/XP-B DNA REPAIR HELICASE 57 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0216 Dere-ChrDere09 4926841 4933410 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0216 09 4926841 4933410 Dere09g0216 09 4926841 4933410 ECH