Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0073 ATGGGATGCACTAGCTCCAAACAGCGTCTTGGGCATGAAGATCCAGCAGTTCTCGCTACCCAAACCCGTTTTGGTATATCTGAAATTGAAGGACTGTATGAGATGTTCAAGATGTTAAGTAGTTCAATGGTTGATGACGGGCTTATTAGCAAAGAAGAGTTCCAGCTGGGCTTATTTGGCAGTAGCGAGATACAGAGTCTGTTTGCTGACAGGGTCTTTCATTTATTTGACACAAACAATGATGGAGTAATAGAATTTGGAGAGTTTGTTCGAGCTCTGAGTGTCTTCCATCCAGCAGCATCCCAGACACAAAAAGCAGCTTTTGCATTTCAAATTTATGATTTATGGCAAACAGGCTTCATTGGACGTGACGAGGTAAGAGAAATGATATTGGCTCTTCTCAGAGAGTCAGATTATATTCTTTCTGACGACATAATTAACGCCATAATTGATCAGACATTTAAAGAGGCAGATTTAAAAGGAGATGGAAAGATTGATCTAGAGGAGTGGAAGGAATTTGCAGCTCAGAACCCATCCGTACTAAAGAATATGACAATTCCATATTTAAAGTAA 573 0.3997 MGCTSSKQRLGHEDPAVLATQTRFGISEIEGLYEMFKMLSSSMVDDGLISKEEFQLGLFGSSEIQSLFADRVFHLFDTNNDGVIEFGEFVRALSVFHPAASQTQKAAFAFQIYDLWQTGFIGRDEVREMILALLRESDYILSDDIINAIIDQTFKEADLKGDGKIDLEEWKEFAAQNPSVLKNMTIPYLK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0073 190 SUPERFAMILY EF-hand 16 188 IPR011992 -
Dere09g0073 190 CDD EFh 105 175 IPR002048 GO:0005509
Dere09g0073 190 SMART efh_1 149 177 IPR002048 GO:0005509
Dere09g0073 190 SMART efh_1 68 96 IPR002048 GO:0005509
Dere09g0073 190 SMART efh_1 105 133 IPR002048 GO:0005509
Dere09g0073 190 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Dere09g0073 190 PANTHER CALCINEURIN B 1 190 IPR045198 GO:0005509|GO:0019722|GO:0019900
Dere09g0073 190 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Dere09g0073 190 PRINTS Recoverin family signature 72 93 - -
Dere09g0073 190 PRINTS Recoverin family signature 165 185 - -
Dere09g0073 190 PRINTS Recoverin family signature 119 137 - -
Dere09g0073 190 PRINTS Recoverin family signature 10 24 - -
Dere09g0073 190 Gene3D - 14 190 - -
Dere09g0073 190 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Dere09g0073 190 Pfam EF hand 70 94 IPR002048 GO:0005509
Dere09g0073 190 ProSitePatterns EF-hand calcium-binding domain. 77 89 IPR018247 -
Dere09g0073 190 Pfam EF hand 150 173 IPR002048 GO:0005509
Dere09g0073 190 CDD EFh 34 94 IPR002048 GO:0005509
Dere09g0073 190 FunFam calcineurin B-like protein 3 14 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0073 Dere-ChrDere09 3693092 3694288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0073 6 190 EF-hand Containing Proteins AT1G64480 56.216 6.49e-75 222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0073 09 3693092 3694288 Dere09g0073 09 3693092 3694288 ECH