Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0072 ATGTCCATTTATATGAGCTGTTTTTGCTTCAAGAAGGTTAGACAAAAGACATATCATGAACAGCCTATCATGCTTGCTTCAGAGACATGGTTCACAGTGAATGAGGTGGAGGCTTTGCTCGAGCTGTTTCGAAAACTAAGCAGTGCGGTTGTTGATGATGGCCTTATTGACAAGCAAGAGTTCAGGCTTGCACTTGGACAGAACGGCAATAAACAGAATCTATTTGCAGACAGGGTATTTGATATGTTTGATATTAAGCGTAATGGAGTAATTGACTTCGAGGAATTTGTTCGCTCGCTAAGCATCTTTCATCCGAATGCACCTACAGAGATGAAAATTGCATTTGCATTCAGATTGTTTGACCTTTGGGGGACTGGATACATTGAGCGTGGTGAGTTGAAGGAGATGGTATTGGCTATTCTGGCTGAATCAGATGCAATAGTTTCAGATGATGTTGTAGAATCAATTGTGGAAAAGACCATAAAGGAGGCAGACTCAAAAGGAGATGGAAAGATCGATGAAGAGGAGTGGAAAGAATTTGCAGCAAAGTATCCATCTCTTCTAAAAATGATGACTCTTCCATATCTAAAGGATATAACTATGGCCTTCCCCAGCTTTATATTGCACACCAAGGTGGAAGACTAA 645 0.4062 MSIYMSCFCFKKVRQKTYHEQPIMLASETWFTVNEVEALLELFRKLSSAVVDDGLIDKQEFRLALGQNGNKQNLFADRVFDMFDIKRNGVIDFEEFVRSLSIFHPNAPTEMKIAFAFRLFDLWGTGYIERGELKEMVLAILAESDAIVSDDVVESIVEKTIKEADSKGDGKIDEEEWKEFAAKYPSLLKMMTLPYLKDITMAFPSFILHTKVED 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0072 214 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Dere09g0072 214 PANTHER CALCINEURIN B 9 214 IPR045198 GO:0005509|GO:0019722|GO:0019900
Dere09g0072 214 SMART efh_1 112 140 IPR002048 GO:0005509
Dere09g0072 214 SMART efh_1 156 184 IPR002048 GO:0005509
Dere09g0072 214 SMART efh_1 75 103 IPR002048 GO:0005509
Dere09g0072 214 FunFam calcineurin B-like protein 3 21 214 - -
Dere09g0072 214 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Dere09g0072 214 Pfam EF-hand domain pair 53 98 IPR002048 GO:0005509
Dere09g0072 214 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Dere09g0072 214 SUPERFAMILY EF-hand 25 206 IPR011992 -
Dere09g0072 214 Pfam EF-hand domain pair 111 180 IPR002048 GO:0005509
Dere09g0072 214 CDD EFh 112 182 IPR002048 GO:0005509
Dere09g0072 214 PRINTS Recoverin family signature 126 144 - -
Dere09g0072 214 PRINTS Recoverin family signature 172 192 - -
Dere09g0072 214 PRINTS Recoverin family signature 79 100 - -
Dere09g0072 214 Gene3D - 22 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0072 Dere-ChrDere09 3689135 3692106 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0072 5 214 EF-hand Containing Proteins AT4G17615 57.143 3.58e-88 257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0072 09 3689135 3692106 Dere09g0072 09 3689135 3692106 ECH