LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g0052	ATGGCGATCGCATCTCCATCTACTCCGAGCTTCTCAGCTTCTTTCTGCTCCACTAGGACCCAATTTACTCGCCTCACGCGCTTCCCCTGCGTCACCTTGTCTCGGTGTCGCGGAAACCAAACGCGCTCTTTAACTCGTCGACTTGTCATTTCATCCCGTCTCAATTCGTCTAAATCCTCCGATGCTGGTGGTTCTGTCTCGCCGGACAGTGGAGATTTCCCCTACGAGCTCCAGCACGAATTTTCGCCCCAGCGTCAGAGGAGCGGATCGCCGGTTTACGTCACCCTTCCAGTGAATGCCGTAGGCCCAGAGGGGCAGGTCCTGAGGCGGAAAGTTATTACGATATCGCTCCGGGCGCTCGCATTGGCTGGAGTAGAAGGCGTGGTTTTGGAGATTTGGTGGGGTTTAGTTGAGAGGAATGAGCCTAGGGTTTATAATTGGCGAGGATATTCGGAACTCGTCATGCTGGCCCGGACGTTCGGCCTGAAGGTTCGAGTTGTCCTTGCGTTTCATCAGTGCGGCACGGACGCTGCTGATCCTAATTGGATACCTCTTCCGCTATGGGTGCTTGATGAGATGAAAAAAGATCCAGAATTAGAATATTCAGATAGGTTTGGGAGAATAAATACTGAATACATCTCACTTGGATGTGATACTCTTCCTGTGCTATGTGGACGATCTCCAATTCAGGCATATGCTGATTTTATGAGGGACTTCAGGGACACCTTCAGGCCTTATTTTGGCATTATCATAACAGGAGTACAAATTGGTATGGGTCCTGCTGGTGAACTGAGATATCCCTTATGCCCTAACCAGAAGTCATTACAAGCTAGGTCCCGTGAACTTGGAGAATTTCAGTGCTATGATAAGTATATGCTTGCATCTCTAAGTGCTTGTGCTAGAGAGATTGGAATGCATGAATGGGGATATGGTGCTCCACACGACCCCCCACGTGGTGCTCCACTTGGTAGTGCAAATTTCATGCTCAATCCTGAAAATACGTTGTTTTCTAGAAGTGAGTATGGCCCTTGGAATTCGCCACAGGGTAAGTTTTTTCTTGAATGGTACTCGGGGATGCTGCTACTGCATGGAGAAAGAATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTAAATATATCAGCAAAAGTGGCTGCTATTCACTGGCACTATATGACCGATTCCCATCCATCAGAGTTAACTGCAGGCTATTACAATACTTCTAAGAGGGATGGATACTTACCCATTGCTCGCATGTTTAGTAAGTATGGATTTGGCATGTGTTGCTCATGTTTCGAAATGCGAGACGCAGCAGAAAAAAAGATAAACCCAGATGGTAGCCCTGAAGGTTTTCTTAGACGGCTGTTGTTGGCTGCTAGGCTTAGTGACATACCACTGGAAGGTCAAAACTTCTCTTCTAATTTTAATGATATATCATTCGAGCAGGTGCTGGAGATGTCAAAGTTTTACACAGATGGGGTTGAAAAGCGTCCCTTCTCATTCAACTTTGTGAGAATGGACGGGAAAATGTTTGAACCTCGTTTTTGGGATCGGTTTACTCGTTTTGTTAGGCAAATGTCTGATGGGAATACTTTTCGAGCCAGATTAAATTCTGTTAATGACGTACGTTTGAAGTCCGCATCTGGGGCTCTTGAAGTGGGACTGTTCTACCAGCACTCTTAA	1689	0.4654	MAIASPSTPSFSASFCSTRTQFTRLTRFPCVTLSRCRGNQTRSLTRRLVISSRLNSSKSSDAGGSVSPDSGDFPYELQHEFSPQRQRSGSPVYVTLPVNAVGPEGQVLRRKVITISLRALALAGVEGVVLEIWWGLVERNEPRVYNWRGYSELVMLARTFGLKVRVVLAFHQCGTDAADPNWIPLPLWVLDEMKKDPELEYSDRFGRINTEYISLGCDTLPVLCGRSPIQAYADFMRDFRDTFRPYFGIIITGVQIGMGPAGELRYPLCPNQKSLQARSRELGEFQCYDKYMLASLSACAREIGMHEWGYGAPHDPPRGAPLGSANFMLNPENTLFSRSEYGPWNSPQGKFFLEWYSGMLLLHGERICREAETIFRGTEVNISAKVAAIHWHYMTDSHPSELTAGYYNTSKRDGYLPIARMFSKYGFGMCCSCFEMRDAAEKKINPDGSPEGFLRRLLLAARLSDIPLEGQNFSSNFNDISFEQVLEMSKFYTDGVEKRPFSFNFVRMDGKMFEPRFWDRFTRFVRQMSDGNTFRARLNSVNDVRLKSASGALEVGLFYQHS	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g0052	562	Gene3D	Glycosidases	81	555	-	-
	Dere09g0052	562	Pfam	Glycosyl hydrolase family 14	112	524	IPR001554	GO:0000272\|GO:0016161
	Dere09g0052	562	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	35	535	IPR001554	GO:0000272\|GO:0016161
	Dere09g0052	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	167	188	IPR001554	GO:0000272\|GO:0016161
	Dere09g0052	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	124	138	IPR001554	GO:0000272\|GO:0016161
	Dere09g0052	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	397	408	IPR001554	GO:0000272\|GO:0016161
	Dere09g0052	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	344	363	IPR001554	GO:0000272\|GO:0016161
	Dere09g0052	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	145	163	IPR001554	GO:0000272\|GO:0016161
	Dere09g0052	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	380	396	IPR001554	GO:0000272\|GO:0016161
	Dere09g0052	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	415	438	IPR001554	GO:0000272\|GO:0016161
	Dere09g0052	562	SUPERFAMILY	(Trans)glycosidases	88	544	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g0052	Dere-ChrDere09	3455860	3458785	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g0052	91	537	Glycoside Hydrolase	AT3G23920	47.124	4.35e-144	426

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere09g0052	09	3455860	3458785	Dere09g0052	09	3455860	3458785	ECH