Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1137 ATGACAGCGACGCACCGTGAGAGAAGTAGCAGGACAGCAGCCTTAAGATCCATCCAAACAAAGCCGAACTCTCCCTTTCGAAATACTCATTGTGGTTTTCTCTGCCGCTCTTGCCCCTTTGGTCTCTCGCTCCCTTTCTGCGTCTTCGTTGTTGTGCCCTTCTTAAACAATCTCGTCCTCAAAGTTTGTTCTTGTTCCCGATCTCAGCACTGTAAGGTTGTAAGAGACGGTATAGTCTCTGGTGCTGTTGAATGTGGTCGACTTGCAATCATGAGCGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCAGAAGAGATGGATTTGACAGATCAGCAATTGAAGCCGTGCAAATGTGGTTATGAGATATGTGTTTGGTGTTGGCATCACATATTGGACATGGCTGATAAGGATGACACAGAGGGGCGATGCCCGGCATGTCGTGCGCCTTATGATAAGGAGAAGATTGTAGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAACTAACATGGAGAGAAAGATGAAGAACCAGAAAGCAAAGTCTAAGTCATCTGAAGGACGGAAGCAACTCAGCAGTGTGCGAGTGATTCAGCGAAATCTTGTATACATAGTTGGATTGCCTCTTAATCTGGCAGATGAAGATCTGCTCCAGCAGTGGGAGTATTTTGGTCAGTATGGGAAGGTCTTGAAAGTATCAATGTCTCGAACGGCAGCTGGTGTTATTCAACAGTTTCCAAACAGTACATGTAGTGTATATATAACTTATTCAAAGGAAGACGAAGCAATTCGTTGTATTCAAAGTGTACATGGATTTGTCTTGGAGGGTAGACCATTAAGGGCATGTTTTGGAACCACGAAATATTGTCATGCATGGCTCCGAAATGTGCCTTGCGGCAATCCTGATTGTCTATATCTGCACGAGATTGGCTCTCAAGAAGATAGTTTTACAAAAGATGAAATTATTTCAGCATACACTAGTCGAGTTCAACAATGTACTGGTGCTGCAAACAATATGCAAAGACATTCAGGAAATGTATTGCCACCTCCTGTGGATGATTATATGAACCATTCTTCAGGAAAGCCCATTGCAAAAAATGCTTCTAGTAACTCTTCTAACGTCATAAAAGATTCACCTCCAAATGGAAGTTCAGGGAGATCTATAGCTCTCCCCGCTGCTGCTGCATGGGGTACACGGGCTACAGGTTGTCAGTCCCGTATTGGAGGTCTGTTGTGTCCAAATGGACCAACCAAGCCGAAACCTGATACAGTCAGTACCACCCTAGCCTTTTCTTCAGCTGTTGCAGGCACAATTCAGGCTTCTACATTGCATGATAACATGACGAAGAGGCCTACATCAAGTGATGGGAATCATATTGTGCTGCCTAGAGTAGAAAATGAATTATTGAATTTTGTTAAACAACACCATAGCATGGACAATCTGTGTAATGCAGGTGAAAAAACTGCAACATCCTATGTTTCTCCTGCACCTGTGAATTTGAACAGCCAGCTGTCTTCTCAACCGTCATCCAGAGGCAATGATGGAGGCAGCTGTCCTACAGCAAACACAACAAATTCTACTGACATTACCAGGCAGTTGTGCAGGTCTGGTCCTGAGGAAGCAAGTACTGCAACCAATGAAGAGATTCAGAAGTTGTGCTCTGACTTGTCCTCAATTAACATTGATAGATATGTCCAAAATGAACACTATGGTGCAACCAAACCTAGTAGCCCCCCATCTGATTGTACAATTATTAAATCTTCTCTGATTCAAGGGTCTCCAAATAAAGCTGACAACTCTGGAGATGCTCTAATTACAACTGTGGCTAGTAAAGCTGCTACATCAGATAATGGGGTGTGTAGTCGTAGGGAACAATGCGATTGGAGATTGGATTCACAAGCTTATGTAGTATCAGATACAACTGAAGTGGATGATATAGCATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTTGTCATTCTCCTTACTTGCTTAAATCTGCAAGTTTTGCTAATGTTTCTAACCATTCTAGTCCTCATCTTCTGCAGCATGGTGAACCTTGCACTGCTATAAATGCTGGTTCTTTATCTGCAGATGATAAAATTGGGGAGGATTCCTTATTACATGCATCTAGCATATTATGGGATGGTTACCCTGAGAAATTGGTAGGTGGCAGCTCTTGTGGTTTGAACAGCACCATTGAACGTTCTTTATTGCTTCAACATGAAAGAAATGAGCAATGTATTGCAAATTTTCCTGCCAAGGCAGTTGATGTTAAAAGTGATGCTGCTATGGATAGGGGTGAAAGTAGTATAATTTCTAATATATTGTCCATGGAATTTGATCCGTGGAATAACTCACTGATATCACCTCAGAATTTGGCTAAATTGTTGGGTGACAACACTGATAACCAGTGTGGTCCATTAAAAAACACTAATTCATGGAAAGTTCAAAATAACAACCAATCAAGATTCTCTTTTGCTAGGCAGGGGGAATCCAGAATTAGAACATTTGATGTACTTCCATCTTATGGTGCTGGTGAGCAACCGAAGAGCCACGCACTCATCCAGGATTTTGCAGGAAGAGACTTGTATTTAAATAAGTTGGGTATTGGAAATGGGTTCCCTACTAGTAACCTTGAGGAATCTAAAAATTTAGGCGGCGGTCACTTTGTTGCTTCATCTAATAAGCTTTCTGCTGTTTCAAGAGCTCAGATTACTGCTCCGCCAGGATTTTCTGTTTCAAGCAGGGCACCACCACCAGGTTTCTCTTCTCATGAGAGAGTGGAGCAGGCTTTTGGCTCCATATCTGGGAATTCCTTGGTTGAGTCTTCTTCCTTGCTGAGAAATTCGTATCAGATGCCTACAAATGGATATATTGGTGGTGCAGGGGACATAGAATTTAATGATCCTGCTATATTGGCAGTTGGTAAGGGGAGACTTGAAGGTGCGCTAAACAGCCCAGAGTTGGACATGAGATCAAATTTCACCCAATTGAATTATTTTGAAAATGAGGCTAGACTTCAATTATTGATGCAACAATCTCTGTCACAGCAGCAGAACCTTAGATTTTCTGAACTTGGAAATAATTTCTCTCAGCGCAGTGATTCTTATGGACTTTCTTCAAGATTAGATCAATCACAAGTCAGTAATTTAGTCCCTTTTCATCAGTTGTCTCCGCAGCAGTCTCGAAATGCAGTCTTGTCAAATGGAATGTGGAATGGGTGGAATGAGGTGCAGAATGGAAACAGTCTGGGTGTGGCCGAGCTTCTGAGAAATGAAAGACTTGGACTTAACAAGGTTTATGCAGGATATGAGGATTCAAAATATAGGATGCAAAATTCTGGGGATCTTTACAGCAGAACATATGGGATGTGA 3381 0.423 MTATHRERSSRTAALRSIQTKPNSPFRNTHCGFLCRSCPFGLSLPFCVFVVVPFLNNLVLKVCSCSRSQHCKVVRDGIVSGAVECGRLAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILDMADKDDTEGRCPACRAPYDKEKIVGMAANCERLVAETNMERKMKNQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQQWEYFGQYGKVLKVSMSRTAAGVIQQFPNSTCSVYITYSKEDEAIRCIQSVHGFVLEGRPLRACFGTTKYCHAWLRNVPCGNPDCLYLHEIGSQEDSFTKDEIISAYTSRVQQCTGAANNMQRHSGNVLPPPVDDYMNHSSGKPIAKNASSNSSNVIKDSPPNGSSGRSIALPAAAAWGTRATGCQSRIGGLLCPNGPTKPKPDTVSTTLAFSSAVAGTIQASTLHDNMTKRPTSSDGNHIVLPRVENELLNFVKQHHSMDNLCNAGEKTATSYVSPAPVNLNSQLSSQPSSRGNDGGSCPTANTTNSTDITRQLCRSGPEEASTATNEEIQKLCSDLSSINIDRYVQNEHYGATKPSSPPSDCTIIKSSLIQGSPNKADNSGDALITTVASKAATSDNGVCSRREQCDWRLDSQAYVVSDTTEVDDIASFDNQRLKDPEVCHSPYLLKSASFANVSNHSSPHLLQHGEPCTAINAGSLSADDKIGEDSLLHASSILWDGYPEKLVGGSSCGLNSTIERSLLLQHERNEQCIANFPAKAVDVKSDAAMDRGESSIISNILSMEFDPWNNSLISPQNLAKLLGDNTDNQCGPLKNTNSWKVQNNNQSRFSFARQGESRIRTFDVLPSYGAGEQPKSHALIQDFAGRDLYLNKLGIGNGFPTSNLEESKNLGGGHFVASSNKLSAVSRAQITAPPGFSVSSRAPPPGFSSHERVEQAFGSISGNSLVESSSLLRNSYQMPTNGYIGGAGDIEFNDPAILAVGKGRLEGALNSPELDMRSNFTQLNYFENEARLQLLMQQSLSQQQNLRFSELGNNFSQRSDSYGLSSRLDQSQVSNLVPFHQLSPQQSRNAVLSNGMWNGWNEVQNGNSLGVAELLRNERLGLNKVYAGYEDSKYRMQNSGDLYSRTYGM 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1137 1126 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 280 IPR000504 GO:0003723
Dere08g1137 1126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 167 IPR013083 -
Dere08g1137 1126 MobiDBLite consensus disorder prediction 355 386 - -
Dere08g1137 1126 Pfam RING/Ubox like zinc-binding domain 99 151 - -
Dere08g1137 1126 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 201 282 - -
Dere08g1137 1126 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 91 167 - -
Dere08g1137 1126 MobiDBLite consensus disorder prediction 361 385 - -
Dere08g1137 1126 MobiDBLite consensus disorder prediction 496 525 - -
Dere08g1137 1126 Gene3D - 201 282 IPR012677 -
Dere08g1137 1126 ProSiteProfiles Zinc finger RING-type profile. 99 147 IPR001841 -
Dere08g1137 1126 SMART rrm2_1 201 282 IPR003954 GO:0003676
Dere08g1137 1126 SUPERFAMILY RING/U-box 91 156 - -
Dere08g1137 1126 SUPERFAMILY RNA-binding domain, RBD 194 280 IPR035979 GO:0003676
Dere08g1137 1126 CDD RRM_CNOT4 195 294 IPR034261 -
Dere08g1137 1126 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 286 IPR000504 GO:0003723
Dere08g1137 1126 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 91 1120 IPR039780 GO:0004842|GO:0030014
Dere08g1137 1126 CDD mRING-HC-C4C4_CNOT4 98 147 IPR039515 -
Dere08g1137 1126 SMART rrm1_1 201 282 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1137 Dere-ChrDere08 15330170 15338298 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1137 08 15330170 15338298 Dere07g0891 07 12399864 12404499 CCT
Dere08g1137 08 15330170 15338298 Dere08g1137 08 15330170 15338298 ECH