Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1025 ATGGAAAAGAAGGAGCGAGAGATTGTGGTGGATAAAGGGTATATATTTTCCAGTGACGTTGTTGTGGCTATGGAAACATACAGCAAGGAATTGGCTGATTCAGTAATGGAAAGAGCTGAAACTATATGCAGAAAATTGAACACCACCAATGATGCATATATGCATCCTTATTACTTTTATGTTATTCTTCTGAAATTGAAACTGTCTGTATATATTTGCCGACGAAGGAGAGAGTTAAGACTAGGTAAGGTGTACAGAACCATACGTGTCCAAAGTTATCCCTGCCCTCTCATTGACATTGTCAGAGCACCAACTACCTCTGATCCTCTTCCCCACCCTGCATTTTTGCAGAATCACTTTCCTCTTTCTTTCCTCCTTATGGGTTCTCTTTTTTTAGTTCTTATATTCTCTCTCGTGATTTCTTCATGCATTGCTCAGCTTCCTCCCTCACCCGGCTACTTCCCAAGTTCCAGAATTAGTGCTGTAAGCTTTGATCAAGGGTTTAGAAGCCTGTGGGGAACTCAGCATCAGAGATTAGAGCAGGGCTCATTAACAATCTGGCTTGACTCCACTTCAGGGAGTGGATTCAAGTCACTGCACTCTTACCGATCTGGATATTTCGGTGCTGCAATTAAGCTTCAGCCTGGTTATACTGCGGGAGTCATCACATCTTTATACCTCTCAAACAACCAAGACCACCCAGGAAACCATGATGAAATCGACATTGAGTTTCTCGGTACTACACCAGATAAACCGTATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATAAGAATATTATCGGCAGGGAGATGAAGTTCGGCCTTTGGTTCGACCCTACACAGAATTTTCACCACTATGCTATTCTTTGGAAACCCAGTGAGATAATATTTCTAGTGGATGATGTGCCCATAAGGAGGTATCCTAGGAAGAGCGAGGCCACATACCCTACAAGACCAATGTATGTGTACGGATCTATATGGGATGCATCTTCTTGGGCAACAGAGGATGGAAAATACAAAGCAGATTATAGGTACCAGCCCTTCATTGGTAGGTACAAAATGTTCATACTGCAGGGTTGCACAACTGAAGGCCAAGCCTCGTGCCAACCGCCTTCTGCCTCGCCCTCTGGCCATGCCAGTCTTAGCCCTCGCCAACTCCAGGCCATGCAATGGGTCCAAGACAACTACTTGGTTTATGACTACTGCGATGACCCCAAGAGAGACCACACCCTCACTCCTGAGTGCTAG 1257 0.4463 MEKKEREIVVDKGYIFSSDVVVAMETYSKELADSVMERAETICRKLNTTNDAYMHPYYFYVILLKLKLSVYICRRRRELRLGKVYRTIRVQSYPCPLIDIVRAPTTSDPLPHPAFLQNHFPLSFLLMGSLFLVLIFSLVISSCIAQLPPSPGYFPSSRISAVSFDQGFRSLWGTQHQRLEQGSLTIWLDSTSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDKNIIGREMKFGLWFDPTQNFHHYAILWKPSEIIFLVDDVPIRRYPRKSEATYPTRPMYVYGSIWDASSWATEDGKYKADYRYQPFIGRYKMFILQGCTTEGQASCQPPSASPSGHASLSPRQLQAMQWVQDNYLVYDYCDDPKRDHTLTPEC 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1025 418 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 161 418 IPR044791 GO:0004553
Dere08g1025 418 Pfam Glycosyl hydrolases family 16 165 347 IPR000757 GO:0004553|GO:0005975
Dere08g1025 418 Gene3D - 144 418 - -
Dere08g1025 418 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 142 355 IPR000757 GO:0004553|GO:0005975
Dere08g1025 418 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 382 418 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Dere08g1025 418 FunFam Xyloglucan endotransglucosylase/hydrolase 151 418 - -
Dere08g1025 418 SUPERFAMILY Concanavalin A-like lectins/glucanases 163 418 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1025 Dere-ChrDere08 14226421 14230871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1025 129 418 Glycoside Hydrolase AT3G44990 67.586 1.31e-146 417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1025 08 14226421 14230871 Dere07g0750 07 10919413 10920939 CCT
Dere08g1025 08 14226421 14230871 Dere08g1025 08 14226421 14230871 ECH