Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0995 ATGGCGGCCACTTTTGCCGGTATAGTTCTCTTCGCCGTTGCTCTGCTGTCGGCGGCGGCAGCGACTTGTGGATTTCCTGCGTCTCTGACTCTGGAAAGAGCTTTTCCGTCGAATCATGGAGTGGAATTGAGTCAGCTGAGAGCTCGGGACAGCCTCAGGCATCGGAGAATGTTGCAGTCTTCAAACGGTGTGGTCGATTTCCCAGTTGCAGGCACCTTCGATCCCTACCAAGTCGGGCTTTACTATACAAAAGTGCAGTTGGGTTCTCCTCCAAGAGAATTCCACGTGCAGATTGACACTGGTAGTGATGTTCTCTGGGTTAGCTGCGGATCCTGCAATGGCTGTCCCCAGACAAGTGGACTCCAAATTCAACTCAATTTTTTTGATCCTGGGAGTTCATCAACATCTTCACTGATCTCTTGTTCTGACCAAAGATGCAGAAGTGGGGTTCAATCATCAGATGCCGGCTGTTCCAGTCAGAACAACCAGTGTGCTTACACATTCCAGTATGGAGACGGCAGTGGGACATCAGGCTACTATGTGTACGACTTGATGCATTTTGATACCATTTTTGAGGGATCTGTGACTTCGAATTCTTCAGCTCCTGTCGTTTTTGGGTGTAGCATCCAGCAGACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGGTTTGGGCAACAGGATATGTCTGTCATTTCTCAGCTCGCTTCACAAGGCATAGCGCCAAGAGTGTTCTCCCATTGCCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAATATAGTTTATACTCCACTTGTTCCATCACAGCCTCATTACAATTTAAATCTGCAGAGCATCTCTGTCAATGGCCAAATATTACCAATTGATTCATCTGTTTTTGCAACATCAAGCAACCGAGGTACCATTATTGATTCTGGAACAACTTTGGCCTACCTTGCAGAAGCGGCTTATGATCCCTTTGTCAGTGCGGTCACGGCTACAGTTCCACAATCCATACGAACTGTTCTTTCCAGGGGAAACCAGTGCTACTTAATCACAAGCAGCATCTCTGATCTTTTTCCTCAAGTCAGTCTGAACTTTGCCGGTGGTGCATCTATGGTTTTAAGACCACAGGACTACCTTATACAGCAGAATTCAGTTGGTGGTGCAGCAGTATGGTGTATTGGCTTTCAGAAAATCCAGGGTCAAGGAATAACAATATTAGGAGATCTCGTATTAAAAGACAAAATATTTGTTTATGATCTGGCTGGTCAACGCATCGGATGGGCTAACTATGACTGTTCTTTGTCGGTTAATGTTTCTGCATCAACTGGCACGGGCAGAAGTGAATATGTGAATGCAGGAGAGCTGAGTGGCAGCACTTCTTTACGTGATGGGATAAATGCGGGAATCTTGGCTTTCTTGATGCACATAACACTGATAAGCTGCTTTGTATTTTTGTAG 1482 0.4602 MAATFAGIVLFAVALLSAAAATCGFPASLTLERAFPSNHGVELSQLRARDSLRHRRMLQSSNGVVDFPVAGTFDPYQVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNFFDPGSSSTSSLISCSDQRCRSGVQSSDAGCSSQNNQCAYTFQYGDGSGTSGYYVYDLMHFDTIFEGSVTSNSSAPVVFGCSIQQTGDLTKSDRAVDGIFGFGQQDMSVISQLASQGIAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQILPIDSSVFATSSNRGTIIDSGTTLAYLAEAAYDPFVSAVTATVPQSIRTVLSRGNQCYLITSSISDLFPQVSLNFAGGASMVLRPQDYLIQQNSVGGAAVWCIGFQKIQGQGITILGDLVLKDKIFVYDLAGQRIGWANYDCSLSVNVSASTGTGRSEYVNAGELSGSTSLRDGINAGILAFLMHITLISCFVFL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0995 493 ProSiteProfiles Peptidase family A1 domain profile. 81 436 IPR033121 -
Dere08g0995 493 FunFam Aspartic proteinase-like protein 2 64 267 - -
Dere08g0995 493 FunFam Aspartic proteinase-like protein 2 268 447 - -
Dere08g0995 493 Pfam Xylanase inhibitor N-terminal 81 266 IPR032861 -
Dere08g0995 493 SUPERFAMILY Acid proteases 76 443 IPR021109 -
Dere08g0995 493 PANTHER ASPARTYL PROTEASES 12 434 IPR001461 GO:0004190|GO:0006508
Dere08g0995 493 CDD pepsin_A_like_plant 81 440 IPR034161 -
Dere08g0995 493 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Dere08g0995 493 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Dere08g0995 493 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Dere08g0995 493 Gene3D Acid Proteases 268 447 IPR021109 -
Dere08g0995 493 Pfam Xylanase inhibitor C-terminal 284 436 IPR032799 -
Dere08g0995 493 Gene3D Acid Proteases 56 267 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0995 Dere-ChrDere08 13921044 13925631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0995 55 441 Miscellaneous Gene Families AT1G44130 26.617 4.47e-41 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0995 08 13921044 13925631 Dere07g0724 07 10617712 10620564 CCT
Dere08g0995 08 13921044 13925631 Dere08g0995 08 13921044 13925631 ECH