Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0893 ATGTCCAAGTACTGCAGCAGCCACTGCGACCGCCGCCGCCGGCTCCTCCGTCTCATACTCGCCGGCATCGTCGCCTTCGTGATCCTAATACTCTTCATCATATTCCTTGTCTGGATCATACTGAGGCCCACCAAACCCCGTTTTATCCTCCAGGACGCCACCCTTTACGCCTTCAACCTCTCGTCCTCCTGCACTGAACCTTGTCCCACCTATCCCACTCTCGGCACCCTCACCCTCGCCATGCAAGTCTCCCTCTCATCTCAAAACCCTAATGATCGAATTGGCGTTTACTATCATGGCCTTGTAGTCTACGCCTCCTACCGTGGCCAACAAGTCTCGCTGTCCACCTTCCTCTCTCCCACCTACCAAGACCATAATGATATCACCGTGTGGTCGCCGTTTTTAAACGGGACAGCCATGCTGTTGCCACCGTCTGCAGTGGATGCTCTGCGGCAGGAACAAAATGCTGGGATGCTGTTGGTGAAGGTAAAGGTCGAAGGAAGCGTGAACTGGAAGGTGGGGACGTGGATGTCCGGGAACTACCACATATACGTCAACTGCCCAGCGTATATCAGGCTCGCCTGTGATGGGGAGAATGGGATCGGAGTAGTTTGTCCAGCGGCGAAGCTTCAGCTTGTGCAAACTTGCGATGTTATGATTAAGCTCTGA 669 0.5411 MSKYCSSHCDRRRRLLRLILAGIVAFVILILFIIFLVWIILRPTKPRFILQDATLYAFNLSSSCTEPCPTYPTLGTLTLAMQVSLSSQNPNDRIGVYYHGLVVYASYRGQQVSLSTFLSPTYQDHNDITVWSPFLNGTAMLLPPSAVDALRQEQNAGMLLVKVKVEGSVNWKVGTWMSGNYHIYVNCPAYIRLACDGENGIGVVCPAAKLQLVQTCDVMIKL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0893 222 PANTHER OS05G0367900 PROTEIN 17 200 IPR044839 GO:0098542
Dere08g0893 222 Pfam Late embryogenesis abundant protein 85 187 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0893 Dere-ChrDere08 12818978 12819646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0893 13 187 EF-hand Containing Proteins AT5G21130 23.295 1.64e-09 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0893 08 12818978 12819646 Dere07g0610 07 9236965 9237630 CCT
Dere08g0893 08 12818978 12819646 Dere08g0893 08 12818978 12819646 ECH