Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0572 ATGTGCGCCTCCAAAGCTAAAACCCTTCGCACTCTGAGTTCCCTCATACGTTCTGCTGGAAAAATTGGTACCTTCAAATATTGTCCTTCAAGCCAATCCTTTTCACAATATTGCAGTTTGAGACTCTTCAGTGATTATACGCTCTCAAGCCTCAAGCTTAAGCAAGCCTCTGACTCAGAGGATCCCGCTAGTCTGGTGTATGAGCGAATCCATTCAATATTGCACCCTGATCAGTCGGTCAAGAGACGTAAACCCCAGGATGTTGATGATGCAAAAAATTTGGAAAAAATATCAGATATGTCATGGTTATCAAAGATGTCCCATAGTAATATATCTCTGCAACGGAAAGGGTTATCTCGTGAGAGGAAACGGAATTTTATGTTTGAATTTGGACAATTAAACAGGTTTGGCAAGTTACTTAAAATGTGTGCAGATAAACTGGGAACAGAGGCTGTGATTAAGTTTTTCAGTAACTTGGGACGAGAACTAGGTGTGAAAGATTACAATGCACTGATAGGAATATGCATAGATAAAGTTAGGGAAACTGAAGATGAAGAAGTTGCAATAGAAGAAATGGCCAAGGTGTTTTACCTCTTTAAATCAATGAGGGAACAAGGTTTTCAGCTTGAAGAGAAAACATATCGTCCACTTCTTTTGCATATAATAGACATGGGTATGGTAGAAGAATTTCAATTTTTTATTGATGTTATTAAAGACAAGAATCCCAGCTCAATTTCAAGGTTGGGTTACTATGAAATGATGTTCTGGATAAGAGTTAATAATGAAGAAAAGATTCAAGATCTCTGTGACTATATTGCATACAATGATAGTGCAGACACTTCAGATTTACGAGAAAATTATTTACTGGCTCTTTGTGAAAGTAATCGGAAGAAGGAGATTTTGCAGGTGTTGGAAATTGTAGACATAAAAAAGCTTTCATCTGCAGAATCTAAAGCAAAGATATTTCAATCATTAGGGAGGCTACTATTGAAATCTGTAGCTGAGAAGTTCCTTTTGGATTTCAAAATGTGTGATCATGGAGCAGATAATATCACAAACTTCATTGCTAGTTATGCTGTTAGCATGCCAAATTTAGTGGTGGAGAATGTCATCTCAAAATTCAAGGAATTGCACCAAACACTTGAAGTTCCACTTTCATCCTCGTCATATGAGAAGCTCATTTTGCACTGCTGCAACTCACTGAAGGTGCATATAGCCCTTGATATTGTTGATGAAATGTGTGAAGGAGGCTTTACCTTATCAACTGAGGTGTTGCATTCCATATTACGAACTTGTGAGGAAACCTGTGAATATATTTTGGTCCATCGGATTTACTCTACCATACGTCACAACAATTTGGAGTCAAATGACAAAATATTTGGGTGTATAATAGCTTTGTTCATGAAGCTGAAAGATTTTGAAAGCGCATATAAGACGCTTAATGACTTGGAGGAAAGGGGTTTGAAGCTTAGTTCAGGCATGTACAATGCTCTAATGGCAGAACATTTCCGAGAGAAGAATATTCATGATGGGCAGAGAGTCCTTGAGCACATGCGGTGTGCCAATGTAAAACCTGATTTACAGACTTTGAGCTATCTCATTTGCAACTCTGAAACTAAAGAGGATATAGACAAGGTATGTTAG 1644 0.3777 MCASKAKTLRTLSSLIRSAGKIGTFKYCPSSQSFSQYCSLRLFSDYTLSSLKLKQASDSEDPASLVYERIHSILHPDQSVKRRKPQDVDDAKNLEKISDMSWLSKMSHSNISLQRKGLSRERKRNFMFEFGQLNRFGKLLKMCADKLGTEAVIKFFSNLGRELGVKDYNALIGICIDKVRETEDEEVAIEEMAKVFYLFKSMREQGFQLEEKTYRPLLLHIIDMGMVEEFQFFIDVIKDKNPSSISRLGYYEMMFWIRVNNEEKIQDLCDYIAYNDSADTSDLRENYLLALCESNRKKEILQVLEIVDIKKLSSAESKAKIFQSLGRLLLKSVAEKFLLDFKMCDHGADNITNFIASYAVSMPNLVVENVISKFKELHQTLEVPLSSSSYEKLILHCCNSLKVHIALDIVDEMCEGGFTLSTEVLHSILRTCEETCEYILVHRIYSTIRHNNLESNDKIFGCIIALFMKLKDFESAYKTLNDLEERGLKLSSGMYNALMAEHFREKNIHDGQRVLEHMRCANVKPDLQTLSYLICNSETKEDIDKVC 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0572 547 Gene3D Tetratricopeptide repeat domain 134 324 IPR011990 GO:0005515
Dere08g0572 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Dere08g0572 547 Gene3D Tetratricopeptide repeat domain 386 547 IPR011990 GO:0005515
Dere08g0572 547 Pfam Pentacotripeptide-repeat region of PRORP 388 545 IPR033443 -
Dere08g0572 547 PANTHER OS02G0132600 PROTEIN 6 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0572 Dere-ChrDere08 8741795 8748723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0572 390 534 Miscellaneous Gene Families AT4G11690 20.690 6.11e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0572 08 8741795 8748723 Dere08g0572 08 8741795 8748723 ECH