Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0562 ATGGCAGGTCGGGGCAAAACCTTAGGATCTGGCGCTGCCAAGAAGGCCACGTCGCGGAGCAGTAAAGCAGGTCTGCAATTCCCCGTCGGTCGTATTGCTCGGTTTTTGAAGGCCGGGAAGTACGCCGAGCGTGTCGGTGCCGGAGCCCCCGTATACCTGGCCGCCGTTCTTGAATATCTCGCGGCTGAGGTTCTTGAGTTGGCCGGAAATGCTGCAAGAGATAACAAGAAAACTCGTATCGTGCCTCGTCACATTCAATTGGCTGTTAGGAACGATGAGGAACTCAGCAAGCTTTTGGGGGATGTGACCATCGCGAATGGTGGTGTTATGCCCAACATTCACAACCTGCTACTCCCTAAGAAGACTGGGACCTCATCAAAGGGCGCTGGTGGTGATGATGACTCTTAA 408 0.5417 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKGAGGDDDS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0562 135 Gene3D Histone, subunit A 1 129 IPR009072 GO:0046982
Dere08g0562 135 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere08g0562 135 FunFam Histone H2A 1 129 - -
Dere08g0562 135 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere08g0562 135 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere08g0562 135 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere08g0562 135 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere08g0562 135 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere08g0562 135 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Dere08g0562 135 SUPERFAMILY Histone-fold 9 124 IPR009072 GO:0046982
Dere08g0562 135 Pfam Core histone H2A/H2B/H3/H4 13 90 IPR007125 GO:0003677
Dere08g0562 135 PANTHER HISTONE H2A 11 122 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere08g0562 135 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Dere08g0562 135 Pfam C-terminus of histone H2A 93 127 IPR032454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0562 Dere-ChrDere08 8657944 8658582 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0562 08 8657944 8658582 Dere08g0562 08 8657944 8658582 ECH