Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0459 ATGACGAAGAAGAAGGAGAAGAGAGTGAACGTGTCCGGAAAGCCAAAGCACTCCCTTGATGCGAATAGGAGCAATGACAGCAAGAGCTCGACGAACTCGCGAAGCGCCGCAACTGTGCGGCGTCTTAATATGTACAATACCAGACCCGTGCGGGATCGTAAAGGGAAGATCTTGAAGAACGAGTATCAATCCAAGGAATTGCCAAATACGCGGATTCAACCCGACCGCCGATGGTTTGGAAACACTCGGGTTGTAAATCAAAAGGAGCTTGAATTTTTCCGGGAAGAGCTTCAAAACCGCATGTCAAGTAATTACAATGTCATATTGAGAGGGAAGAATCTTCCCATGTCTCTCCTGAACGATCACCAAAAGCAAGCGAGAGTTCACCTTCTTGATAGAGAGCCTTTTGGGGATGCATTTGGACCTAAGACGAAAAGGAAACGCCCAAACCTCTTGGCAGCTGATTATGAATCACTAGTTAAGAAAGCTGATGGTTCTCAAGAGGCTTTTGAACAGAAGTATGGTGCTAGTTTATCTGCAAAACCTAATGACGAAGGCGAATTTAGGGATTTAGTGCGGCATACAATGTTTGAGAAAGGTCAAAGTAAACGTATATGGGGTGAGCTTTACAAAGTCATAGATTCTTCTGATGTTGTTGTCCAGGTTCTAGATGCAAGGGACCCACAAGGAACAAGATGTTACCATTTAGAGAAGCATTTGAAAGAAAATTGCAAGCACAAGCACATGGTTCTTTTGCTAAACAAGTGTGATCTAGTTCCTGCCTGGGCGACAAAGGGGTGGCTTAGAGTTTTGTCGAAAGAATATCCAACTCTAGCATTCCATGCGAGTATCAACAAGTCCTTTGGAAAGGGTTCACTTCTGTCTGTTTTGAGACAATTTGCCCGACTAAAAAGTGACAAGCAAGCAATATCTGTGGGATTCATTGGATATCCAAATGTTGGGAAGTCTTCAGTGATCAACACATTACGTACAAAGAATGTCTGCAAGGTTGCTCCAATTCCGGGGGAAACAAAAGTCTGGCAGTATATAACTCTTACAAAGAGGATCTTTTTGATTGACTGCCCAGGTGTTGTATACCACAATAATGACTCTGAAACGGATATTGTGCTGAAGGGTGTGGTACGTGTGACAAACCTGCATGATGCCTCTGAACACATAGGTGAAGTTTTGAAACGTGTCAAGAAGGAGCATTTGGAAAGAGCATATAAGATAAAAGAGTGGGATGATGAGAATGACTTCCTAATTCAGCTTTGCAAAGCAACTGGCAAACTCTTAAAGGGTGGTGAGCCTGACCTGATGACTGCAGCTAAGATGGTACTTCATGACTGGCAGAGGGGTAGAATTCCCTTTTTTGTTGCCCCTCCACGGAAGGATGACTCATCTGAGGAGGAACCCAATGTCAACGGTGTGGATGTTGATGCTGCAGTTGACAGCAATCAGGCATCTGCAGCTTTTAAAGCCATAGCAAATGTCCTTTCATCCCAGCAGCAAAGAAGTGTACCTGTCCAGAGGGATTTATATAGCGAGACTGAGTTGGAGGGAGAGACTGCAGACCAACTTCCAGAAGCTGAGGATAATACATATGAAGAGACACTGACTCCTAAGAGTGACTCGTCAGAGCCTGATCCAGCTACTGAGGTTGATGAGCAGGTTCCTACTAGTGAGTTATAA 1692 0.4427 MTKKKEKRVNVSGKPKHSLDANRSNDSKSSTNSRSAATVRRLNMYNTRPVRDRKGKILKNEYQSKELPNTRIQPDRRWFGNTRVVNQKELEFFREELQNRMSSNYNVILRGKNLPMSLLNDHQKQARVHLLDREPFGDAFGPKTKRKRPNLLAADYESLVKKADGSQEAFEQKYGASLSAKPNDEGEFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYHNNDSETDIVLKGVVRVTNLHDASEHIGEVLKRVKKEHLERAYKIKEWDDENDFLIQLCKATGKLLKGGEPDLMTAAKMVLHDWQRGRIPFFVAPPRKDDSSEEEPNVNGVDVDAAVDSNQASAAFKAIANVLSSQQQRSVPVQRDLYSETELEGETADQLPEAEDNTYEETLTPKSDSSEPDPATEVDEQVPTSEL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0459 563 CDD NGP_1 208 364 IPR024929 GO:0005730
Dere08g0459 563 PANTHER GTP-BINDING PROTEIN-RELATED 28 542 - -
Dere08g0459 563 FunFam Nucleolar GTP-binding protein 2 369 459 - -
Dere08g0459 563 Gene3D - 196 366 IPR027417 -
Dere08g0459 563 Gene3D - 367 459 IPR023179 -
Dere08g0459 563 MobiDBLite consensus disorder prediction 1 38 - -
Dere08g0459 563 Pfam 50S ribosome-binding GTPase 312 400 IPR006073 GO:0005525
Dere08g0459 563 FunFam Nuclear/nucleolar GTPase 2 205 367 - -
Dere08g0459 563 PRINTS GTP1/OBG GTP-binding protein family signature 312 332 IPR006073 GO:0005525
Dere08g0459 563 PRINTS GTP1/OBG GTP-binding protein family signature 358 373 IPR006073 GO:0005525
Dere08g0459 563 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 206 367 IPR030378 GO:0005525
Dere08g0459 563 MobiDBLite consensus disorder prediction 1 23 - -
Dere08g0459 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 440 IPR027417 -
Dere08g0459 563 MobiDBLite consensus disorder prediction 505 563 - -
Dere08g0459 563 MobiDBLite consensus disorder prediction 24 38 - -
Dere08g0459 563 Pfam NGP1NT (NUC091) domain 44 168 IPR012971 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0459 Dere-ChrDere08 7039591 7045986 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0459 08 7039591 7045986 Dere08g0459 08 7039591 7045986 ECH