Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0456 ATGGGAGATCGTTTGAGGCCCGTTTTCATTGAGGAATTGCCATCACATTTGATAATAGAAATTTTAAGCTCTGGTAGGCTCAGTGCAGTCGACCTTGTTTGTTTGGAGATGACTTCAAAGACTTTTGGTGGGGCTCATGGTTTGTACTACCTTTTCAAGTTCCGATCATTGGTGGACTTCGCAGCATTTCAGCTGTGTACCTCCCATCTAATCTATTCTAAGATGGGATTGGATTCTCAAAGGGAACTATATGATCGATGTTGCGGAAATTGGAAGCGGGTTTTGCGGTTCTTGCAGTCTGTGGAACAATCGTCTCAGATGGTCGAGACATCATCAGGCAATATGCAAATTACCACTGGTAAATATCACACCTTTTTGATCAGCAACTCCTCCGTCTACTCTTGTGGTTCTGGATTGTGTGGTGTACTTGGTCATGGGCCTGAAACAACACAATGTGTAGCATTTACCCAGGTTAATTTCCCACCTTTGGCACGCGTTATTCATGTCTCAGCCTCCTATAATCATGCAGCATTCGTCATGCAATCTGGAGAGGTATTCACATGTGGAGATAATTCATCTTCTTGCTGTGGGCATAGTGATACAATCCGACCTGTTTTTAGGCCACGACTTATTGAAGCCCTGAAGGGGGTCCATTGCAAGCAGGTCGCAGCAGGGCTTAACTTTACTGTCTTCCTCTCAAGACAGGGTCGTATTTATACATGTGGTACCAACACACATGGTCAACTTGGCCACGGTGACACTCAGGACAGGCCAACTCCCAAAATTGTTGAAGTTCTTGACAGTGTTGGATCTGTTGTTCAGATTGCGGCTGGACCAAGCTATGTCTTAGCTGTCATGGAAAATGGTGCAGTATACTCTTTTGGATCAGGTGCTAATTTCTGCCTTGGCCATGGTGAGCAACACGATGAGTTTCAGCCACGTGTAATACAGTCCTTTAGAAGAAAAGGTATTCATGTGGTCCATGTTTCTGCTGGTGATGAGCATGCAGTGGCACTTGATTCAAATGGATTTGTATATACTTGGGGCAAGGGCTATTGTGGTGCTTTAGGTCATGGAGATGAGATTGATAAGACAACTCCAGAGATCTTGACTAGTCTCAAGAGTCACTTGGCTGTTCAGGTTTGTGCAAGAAAGAGGAAAACCTTCGTTCTGGTCGATTCTGGTTCACTGTATGGATTTGGATCGATGGGATTTGGTAGCCTTGGATTTCTGGACAGAAGGGTATCTGATAAAGTGTTAAGGCCTCGAGTCCTAGATACCTTAAAGTCTCATCATGTTTCTCAGGTTAGCACTGGGCTGTACCACACTGTTGTAATCACTAACCGAGGACAGATCTTTGGTTTTGGAGACAATGAAAGAGCTCAACTTGGGCATGACGCCTTAAGAGGTTGTCTTGAACCTACTCAAATTTTCATTGAAGAAGGTGACGATGAATTGATGACATAG 1467 0.4431 MGDRLRPVFIEELPSHLIIEILSSGRLSAVDLVCLEMTSKTFGGAHGLYYLFKFRSLVDFAAFQLCTSHLIYSKMGLDSQRELYDRCCGNWKRVLRFLQSVEQSSQMVETSSGNMQITTGKYHTFLISNSSVYSCGSGLCGVLGHGPETTQCVAFTQVNFPPLARVIHVSASYNHAAFVMQSGEVFTCGDNSSSCCGHSDTIRPVFRPRLIEALKGVHCKQVAAGLNFTVFLSRQGRIYTCGTNTHGQLGHGDTQDRPTPKIVEVLDSVGSVVQIAAGPSYVLAVMENGAVYSFGSGANFCLGHGEQHDEFQPRVIQSFRRKGIHVVHVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIDKTTPEILTSLKSHLAVQVCARKRKTFVLVDSGSLYGFGSMGFGSLGFLDRRVSDKVLRPRVLDTLKSHHVSQVSTGLYHTVVITNRGQIFGFGDNERAQLGHDALRGCLEPTQIFIEEGDDELMT 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0456 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 289 342 IPR000408 -
Dere08g0456 488 Gene3D - 294 484 IPR009091 -
Dere08g0456 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 288 IPR000408 -
Dere08g0456 488 Pfam Regulator of chromosome condensation (RCC1) repeat 433 461 - -
Dere08g0456 488 Pfam Regulator of chromosome condensation (RCC1) repeat 288 339 IPR000408 -
Dere08g0456 488 Pfam Regulator of chromosome condensation (RCC1) repeat 342 383 IPR000408 -
Dere08g0456 488 Pfam Regulator of chromosome condensation (RCC1) repeat 131 179 IPR000408 -
Dere08g0456 488 Pfam Regulator of chromosome condensation (RCC1) repeat 236 285 IPR000408 -
Dere08g0456 488 Pfam Regulator of chromosome condensation (RCC1) repeat 182 232 IPR000408 -
Dere08g0456 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 449 IPR000408 -
Dere08g0456 488 SUPERFAMILY RCC1/BLIP-II 379 479 IPR009091 -
Dere08g0456 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 343 394 IPR000408 -
Dere08g0456 488 Gene3D - 75 293 IPR009091 -
Dere08g0456 488 SUPERFAMILY RCC1/BLIP-II 108 412 IPR009091 -
Dere08g0456 488 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 329 339 IPR000408 -
Dere08g0456 488 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 165 477 - -
Dere08g0456 488 PRINTS Chromosome condensation regulator RCC1 signature 238 254 IPR000408 -
Dere08g0456 488 PRINTS Chromosome condensation regulator RCC1 signature 329 345 IPR000408 -
Dere08g0456 488 PRINTS Chromosome condensation regulator RCC1 signature 184 200 IPR000408 -
Dere08g0456 488 PRINTS Chromosome condensation regulator RCC1 signature 439 457 IPR000408 -
Dere08g0456 488 PRINTS Chromosome condensation regulator RCC1 signature 345 359 IPR000408 -
Dere08g0456 488 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 183 235 IPR000408 -
Dere08g0456 488 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 436 446 IPR000408 -
Dere08g0456 488 CDD F-box_SF 11 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0456 Dere-ChrDere08 7018149 7021446 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0456 08 7018149 7021446 Dere08g0456 08 7018149 7021446 ECH