Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere08g0453 | ATGAGCAAAGCCAGGGACGAAGAAGACGAAGAAGAGCGCTTCTACGAGTCCAACGACCGTTTAGTTTCGTCCTCTTGCTCCTGCTCCACTTCCAACTCCGACGACGACGACAACGACAACGACTCTAGTTCCAACTCTCCCAATTATGTTTCGGGCCAACCCTTCCCTGTACCCAAATTTCCTGCGGCCATGCGCAAGTACGATGTATGGATCTCCGAACCGTCATCGGTTTCCGAACGCCGGACCCGTCTTCTTCGCGAGTTGGGTCTTGCTGGCGACCCGTCATTGTCCCGGGGAAAGCCTGTTTCTGCCGTCGATCTTAGAGAGGTGGGCAATGAAGAGTTTGGCCGATCGGCGTCTTGCGATCAGTTGAGTTGCCAACAACAGGGTGAGACTTCTGGTAGCACTGCCGTCATATCAGATGGCGGCGCGAATCGCAGTGACTTGCCAGTTTGTGGTGGTCAGGCCCATCATCATTGCAATAAGTCTTCTTCTTCTTCTTTTTGTTCTGCTTCAATTCTTTCTATTCATTCGGTCGCACCTGAAACCGGCTCAGTTGTAAATAGCCATAATCAAGTTGTTAAGTCGAGGTGCGGTAATGGCAATGGATACTCGGTTGCTGGTGCCGCCCTCTCCTATAAACCTCCTTTGGGGGAAAATCGCAGAAGGTCCGATGAAATCCGAAGTGGCTCCTCAAACTTGAGTGTGGATTTAGGCCAATTTTCGGTGGAGCCGGATTTGGAGAATGCGGGTCGTGGAGAGGTGGAGGAGGGTGTGGACTGTAGTGGGCTTGACAGGGCCAACGAACAAGCGTGCACCATAAGAGATCTCGATAATGGGAAAGAGTTTGTAGTCAAGGAGATTAAGGAAGACGGGACTTGGAAAAAAATAAAAGAAGTGGGAACTGGAAGGCAGTTGACGTTGGAGGAGTTTGAGATGACAGTGGGGCACTCACCAATTGTTCAAGAATTGATGCGACGGCAAAATGTTGAGGAGGGTAATACGGACAATGTAGATTCAAATGCAAATGCAAATGCAAATGGCGGCAGTGAAGGTGGTTCCAAGGTGAAGAAGAAAGGGAGTTGGTTTAACTTTAAGAATATAAAGAGTGTTGCTAGCACCATGACAGGTTATAAGGAGAGACGGAGCTGTGATGAAAGGGATAACCCATCAGAGAAGGGTGGGCGGAGGTCAAGCTCTGCAACAGATGATAGCCAGGATGCTTGTTTACATGGGCCTGAAAGAGTACGGGTTAGGCAATATGGAAAGTCATGTAAAGAGCTTACAGCACTCTATAAGAGCCAGGAGATACAGGCTCATACTGGATCTATATGGAGCATTAAGTTTAGTTTGGACGGGAAATATCTTGCTAGTGCTGGTGAGGATTGTGTTATTCATGTTTGGCAAGTTGTGGAGTCAGAGAGGAAGGGGGAGCTGCTAACGGAGAAAACAGACTATGGGAATATGAATATGTTATTTGTTATGAATGGATCACCAGAACCAACTTTGCTATCCCCCATTAGGGAGAGCCATCTAGAGAAGAAGAGAAGGGGGAGGTCATCCATAAGCAGAAAATCATTGAGCTTGGACCAGCTAGTGGTGCCAGAAACTACGTTTGCACTCACTGAAAAACCTATTTGTTCATTCCAAGGTCATCTTGAAGATGTGCTTGACCTATCTTGGTCTAAATCTCAGCACTTGCTCTCCTCATCAATGGACAAAACAGTGCGGCTGTGGCATTTATCTAGCAAGTCTTGTTTGAAAATTTTTTCGCACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATCAGCGGATCTTTGGATTATAAGGTTCGGATATGGAGCATTCCTGATCGTCAAGTTGTTGATTGGACTGATCTGCATGAGATGGTCACTGCTGCTTGCTATACGCCAGATGGTCAGGGTGCGCTGGTTGGTTCATGCAAGGGTAGCTGCCATTTATATAATACATCAGAAAATAAGTTGCAACAGAAATGTCAGATCAATCTGCAGAACAAGAAAAAGAAGTCGAACCTAAAGAAAATTACTGGCTTCCAGTTTGCTCCAGGAAGTTCATCTGAATTACTCATCACATCTGCTGATTCACGAATTCGGGTGGTTGATGGTGTTGATCTGGTTCATAAGTTCAAAGGGTTTCGTAACACAAATAGCCAAATTTTAGCCTCCCTCACAGCAAATGGAAAATATATTGTCTCGGCAAGTGAGGATTCTCATGTGTATGTATGGAGGAATGAAGCTGATTGTAGGCCCAACAGAACCAAAGGTGTCACTATTACTCAATCATATGAACATTTTCATTGTAGAGATGTGTCAGTGGCCATTCCTTGGCCTGGTATGGGTGATGCATGGGAAATGCATGATACTTCTGGGGAACAAGCTGGGGCTGATAGTAACCTGGACGATGTCTCATCGGCTAATCATCCTCCAACCCCAGTAGATGAATATTTTGGTACCGAGGGTTCGCAATCTGCATCAGGGTGCAACAATGGTTCACTTCATGGAACCATAGCTAGTGCTACAAACAGCTATTTTTTTGACCGAATTTCCGCAACATGGCCGGAGGAAAAACTTGTTCTTGCCGCGAGGAAACGGAGCCCTCGAGTAAGTGTGGATATCTCTAATGGGGTTAGTCATAACATGTCTGCCTGGGGTCTGGTGATTGTAACTGCTGGCCTTCGAGGGGAAATTCGAGCTTTCCAGAATTTTGGATTGCCGCTGCGGATATAA | 2769 | 0.4626 | MSKARDEEDEEERFYESNDRLVSSSCSCSTSNSDDDDNDNDSSSNSPNYVSGQPFPVPKFPAAMRKYDVWISEPSSVSERRTRLLRELGLAGDPSLSRGKPVSAVDLREVGNEEFGRSASCDQLSCQQQGETSGSTAVISDGGANRSDLPVCGGQAHHHCNKSSSSSFCSASILSIHSVAPETGSVVNSHNQVVKSRCGNGNGYSVAGAALSYKPPLGENRRRSDEIRSGSSNLSVDLGQFSVEPDLENAGRGEVEEGVDCSGLDRANEQACTIRDLDNGKEFVVKEIKEDGTWKKIKEVGTGRQLTLEEFEMTVGHSPIVQELMRRQNVEEGNTDNVDSNANANANGGSEGGSKVKKKGSWFNFKNIKSVASTMTGYKERRSCDERDNPSEKGGRRSSSATDDSQDACLHGPERVRVRQYGKSCKELTALYKSQEIQAHTGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLTEKTDYGNMNMLFVMNGSPEPTLLSPIRESHLEKKRRGRSSISRKSLSLDQLVVPETTFALTEKPICSFQGHLEDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDYKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSCKGSCHLYNTSENKLQQKCQINLQNKKKKSNLKKITGFQFAPGSSSELLITSADSRIRVVDGVDLVHKFKGFRNTNSQILASLTANGKYIVSASEDSHVYVWRNEADCRPNRTKGVTITQSYEHFHCRDVSVAIPWPGMGDAWEMHDTSGEQAGADSNLDDVSSANHPPTPVDEYFGTEGSQSASGCNNGSLHGTIASATNSYFFDRISATWPEEKLVLAARKRSPRVSVDISNGVSHNMSAWGLVIVTAGLRGEIRAFQNFGLPLRI | 922 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere08g0453 | 922 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 549 | 583 | - | - | |
| Dere08g0453 | 922 | Pfam | WD domain, G-beta repeat | 585 | 622 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | Pfam | WD domain, G-beta repeat | 544 | 579 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | Pfam | WD domain, G-beta repeat | 436 | 468 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | SUPERFAMILY | WD40 repeat-like | 433 | 758 | IPR036322 | GO:0005515 | |
| Dere08g0453 | 922 | FunFam | Transducin/WD40 repeat-like superfamily protein | 395 | 498 | - | - | |
| Dere08g0453 | 922 | MobiDBLite | consensus disorder prediction | 379 | 400 | - | - | |
| Dere08g0453 | 922 | Gene3D | - | 393 | 489 | IPR015943 | GO:0005515 | |
| Dere08g0453 | 922 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 589 | 623 | - | - | |
| Dere08g0453 | 922 | MobiDBLite | consensus disorder prediction | 805 | 819 | - | - | |
| Dere08g0453 | 922 | Gene3D | - | 524 | 779 | IPR015943 | GO:0005515 | |
| Dere08g0453 | 922 | MobiDBLite | consensus disorder prediction | 376 | 412 | - | - | |
| Dere08g0453 | 922 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 549 | 589 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | MobiDBLite | consensus disorder prediction | 802 | 821 | - | - | |
| Dere08g0453 | 922 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 437 | 478 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Dere08g0453 | 922 | MobiDBLite | consensus disorder prediction | 19 | 33 | - | - | |
| Dere08g0453 | 922 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 437 | 470 | - | - | |
| Dere08g0453 | 922 | PANTHER | WD REPEAT DOMAIN 44 | 6 | 919 | IPR040324 | - | |
| Dere08g0453 | 922 | FunFam | WD repeat-containing protein 44 | 530 | 796 | - | - | |
| Dere08g0453 | 922 | SMART | WD40_4 | 716 | 757 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | SMART | WD40_4 | 679 | 715 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | SMART | WD40_4 | 583 | 622 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | SMART | WD40_4 | 625 | 663 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | SMART | WD40_4 | 542 | 580 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | SMART | WD40_4 | 430 | 469 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Dere08g0453 | 922 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 589 | 623 | IPR001680 | GO:0005515 | |
| Dere08g0453 | 922 | MobiDBLite | consensus disorder prediction | 333 | 356 | - | - | |
| Dere08g0453 | 922 | MobiDBLite | consensus disorder prediction | 334 | 350 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere08g0453 | Dere-ChrDere08 | 7001073 | 7007119 | Dispersed/Transposed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere08g0453 | 08 | 7001073 | 7007119 | Dere08g0453 | 08 | 7001073 | 7007119 | ECH |