LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g0379	ATGTTCTTGAACTCACTCTCAGCTGTTCTTTATTGTTCAAATCAGCATCTACAGAAAATGAGAGGCCTTGCAAAACCAGTATGCTTCACCTTCATTCTTCTTGCTGCAGCAATCCTTAAGGCTGAAGGCCGTTATCTGCAAAACAGTGCTTCTTCTGCACTATTAACTTCAGATGGGGTTGACGATGATGGTGTTCAACCCCATAAAAATTCTCACTTACCTCTCAAAGGGAATACTGAAAGAATTGAGCTTTTTGATGAGAAGTGTGAGCAAATGTATGGCTTCTTGCCTTGTTCAACTAACATGTTTGGTCATCTCTTTCTGATTCTGGTTTATGAGTTCTTGTTGTTCCATGGAGAATCATATTTGGCTGCTGGGGGTGAGCAGATCTTCAAGATTCTTGGCCCTGGGGTTTTTGGTGCTAGTGCCTTCGATCTTCTTGGTGCCCTTCCTGAGTCCTTAATAATTGTTGTCACTGGGCTTTCCAGAGAGAAGGAAAGTGCACAAGAGTATGCTTCCACTGGAGTTGGCATATTGGCTGGATCATCCATCATGCTTCTCACTGTTGTTTGGGGAACCTGTGTCATCACTGGCAGGCAAAAATTTAAAACTAACTCAAGGCCCTCATCCTTTCATTATTCAAATTCATCAAGTTCAAGTCTCAGAGAATTATTGACTGGGTCCGGGATTACTATGGATAAGGAGACTAAGGACATGGCAAGAATCATGATTCTCTCAATTATACCATTCATAATTATGCAGATTCCCAGTGTGTTCCAATTCTCCTCGGTGCCTCGTGCTGTGACTTTGATGGTTGCTCTTATCGTTTCTGTTATTTTTCTCCTCTCGTACTTCATTTACCAGATATTTGAACCTCAGATAGAGAAAACAAGACTAGAATACATAAAGCATGATGATTTGATACTGAGAATTTTCCAGCATGTTGAAAAGCAAACCCTTCAAAAGATCCTCACTGAGGATGGCACTCCCAATGTGGTGGCCATAAGTGGGCTATATAATGAAATTAGTCAACACGGTGGAGGAGAAAGGGATTTATTAGCTTCTGAAGTAAAAGAGCTGCTGCTCAAGAACAAATTAACTGATACAAACGTCTCAGAGGAACAAGTAGAAGACATGTTAAGAGTGTTCGATCAAAATGGTGACCAAATTATAACCAAGGATGAGTTTGTCACTGGCTTAACACAGTGGATTGAGCAAACAAAGCATGCTTTGGATAAAAAGTACATACCAAGAAAATCTCTCAAGAACATATATCAGGGTTTTATCAAGCCATGGATGGAACATTCCAGAAAAGAGCGTGAAATGAAGGGACATCTTATATCCGAAATCTTAAAGCATGCTCAGAGCGATATGGTTGGCAAGTTTCTCCATGATGATGGCACAGCAGACGAATCTGCCATCAGAAGGTTGTTTGAGGATATTGATAGCAATAGAGACAACTGTGTCTCACAATCCGAGGTAAGGAAACTTGTCACCAACATCCAGTTTGGTAAGGCTGTGGATGAGGACGAAGCAGTCACAAAAATAATTCAAGAACTTGACGTTAACAGTGACAATGTGATTAGTGAGGATGAATTTGTGGATGGATTTGCAAAATGGGTCACCTCATTTTCCACACAAGCTCCTAACTCAAGACCTCTGCCTCATGAAGGAACTCACCAAACCTGGGAATATGTTGAGAAGGTTGTGGAAGAGAATCATCATCACAGAGGAACACATGCATGGGTCATGGCTATAGCAAATGTGGTGCTAGGAATTACCATATTATCTCTTCTTGCAGAGCCCCTGATAGATAGTGTCCAGAAATTCTCTACAGATGCAGGATTTCCATCTTTCTTTGCCTCATTCATTTTAGTCCCCCTGGCCACAAATTTTAGAGAAGCAACCTCGGCCATCAAAGAAGCTAGCCACAAGAAGAGGAGTAACACTTCTCAGACAATTTATGAGATTTATGGAGCAGTTTTCATGAACAACATTCTTGGATTTTCCGCAATTGCTACTCTGATATATGTGAGAGATATTACCTGGCAATTCTCAGCTGAAGTGCTGGTTGTGGCAATTGTTTGTGCTATAATGGGCATCACTGCAAGTTTTCGACCCACTTTTCCTGTGTGGACATCCTTGGGCGCATACCTTTTATATTTGTCGTCTTTAGTTTTGGTTTATGTTCTAAATGATGTCCTACATTATGTTTAG	2217	0.4096	MFLNSLSAVLYCSNQHLQKMRGLAKPVCFTFILLAAAILKAEGRYLQNSASSALLTSDGVDDDGVQPHKNSHLPLKGNTERIELFDEKCEQMYGFLPCSTNMFGHLFLILVYEFLLFHGESYLAAGGEQIFKILGPGVFGASAFDLLGALPESLIIVVTGLSREKESAQEYASTGVGILAGSSIMLLTVVWGTCVITGRQKFKTNSRPSSFHYSNSSSSSLRELLTGSGITMDKETKDMARIMILSIIPFIIMQIPSVFQFSSVPRAVTLMVALIVSVIFLLSYFIYQIFEPQIEKTRLEYIKHDDLILRIFQHVEKQTLQKILTEDGTPNVVAISGLYNEISQHGGGERDLLASEVKELLLKNKLTDTNVSEEQVEDMLRVFDQNGDQIITKDEFVTGLTQWIEQTKHALDKKYIPRKSLKNIYQGFIKPWMEHSRKEREMKGHLISEILKHAQSDMVGKFLHDDGTADESAIRRLFEDIDSNRDNCVSQSEVRKLVTNIQFGKAVDEDEAVTKIIQELDVNSDNVISEDEFVDGFAKWVTSFSTQAPNSRPLPHEGTHQTWEYVEKVVEENHHHRGTHAWVMAIANVVLGITILSLLAEPLIDSVQKFSTDAGFPSFFASFILVPLATNFREATSAIKEASHKKRSNTSQTIYEIYGAVFMNNILGFSAIATLIYVRDITWQFSAEVLVVAIVCAIMGITASFRPTFPVWTSLGAYLLYLSSLVLVYVLNDVLHYV	738

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g0379	738	ProSitePatterns	EF-hand calcium-binding domain.	482	494	IPR018247	-
	Dere08g0379	738	ProSitePatterns	EF-hand calcium-binding domain.	521	533	IPR018247	-
	Dere08g0379	738	SMART	efh_1	512	540	IPR002048	GO:0005509
	Dere08g0379	738	SMART	efh_1	375	403	IPR002048	GO:0005509
	Dere08g0379	738	SMART	efh_1	473	501	IPR002048	GO:0005509
	Dere08g0379	738	ProSitePatterns	EF-hand calcium-binding domain.	384	396	IPR018247	-
	Dere08g0379	738	ProSiteProfiles	EF-hand calcium-binding domain profile.	469	504	IPR002048	GO:0005509
	Dere08g0379	738	ProSiteProfiles	EF-hand calcium-binding domain profile.	371	406	IPR002048	GO:0005509
	Dere08g0379	738	ProSiteProfiles	EF-hand calcium-binding domain profile.	508	543	IPR002048	GO:0005509
	Dere08g0379	738	Gene3D	-	411	551	-	-
	Dere08g0379	738	Gene3D	-	329	410	-	-
	Dere08g0379	738	Pfam	EF-hand domain pair	366	400	IPR002048	GO:0005509
	Dere08g0379	738	Pfam	Sodium/calcium exchanger protein	589	729	IPR004837	GO:0016020\|GO:0055085
	Dere08g0379	738	PANTHER	VACUOLAR CALCIUM ION TRANSPORTER	84	729	IPR004713	GO:0006812\|GO:0008324\|GO:0016020
	Dere08g0379	738	CDD	EFh	474	538	IPR002048	GO:0005509
	Dere08g0379	738	Pfam	EF-hand domain pair	472	535	IPR002048	GO:0005509
	Dere08g0379	738	SUPERFAMILY	EF-hand	361	544	IPR011992	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g0379	Dere-ChrDere08	6286243	6291869	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g0379	424	732	EF-hand Containing Proteins	AT1G53210	40.303	2.36e-62	217

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere08g0379	08	6286243	6291869	Dere08g0379	08	6286243	6291869	ECH