Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0378 ATGAAGAGAAGCATTTTCAGAAAAACATGCTTTATTCTTCTGTTCCTTCTTTTTGTAGTAACAATTGAGGTTGAAGGGCGCCATCTGAAACACACAAACTTTGATAATGAACTAGTTTCAGATGGAGTTGATGATGATAATGGTCAACCCAGAAAAGCTTCTTACTTACTTCTCAAAGGCGTTGAATCTAATCCTCAGGAGGAGGAGGAGTGCAAGCAAATGTATGGGTTCTTACCATGTTCAAACAGCATTTTTGGCCATCTTTTTCTGATTCTGGTTTATGAGTACTTCTTGTTCCATGGAGAATCATATTTGGCTGATGGAGGTGAGCAGATCTTCAGGATTCTAGGCCCTGGTGTTTTTGGTGCAAGTGCCTTTAACATCCTTAGTGCCCTGCCAGAGTCATTAATTCTTCTTGTTTCTGGGCTTCTCAGCAGTAAGGAGATTGCACAAGAGTATGCCTTTACTGGAGTTGGCTTATTGGCTGGATCATCCATCTTGCTTTTGACAGTAGTTTGGGGAACCTGTATTATTACTGGGGGCCAGCAATTTAAAAATGATTCAAGCCTTAGAATCTTTGATGGTTCTAATTCATTACCTAGAAGACTAAAAGCATTTTTGACTGGTTATGGCATTACTACAGATTTGGAGACCAGCTACACTGCAAGAATCATGGTTTTCTCAGTCATACCACTAATAATAATGCAAATCCCTAATTTGTTACAATTCTCTTCTGGGCCAAGAACTGTGACCTTGATAGTCGCTCTCATCATTACAGTTGTCTTTCTGCTCTTGTACTTCACTTACCAGATTTTTGAACCATGGATACAGAAAAGAAGATTGGAATATGTGAAACATGATCATTTATTAGTAAGAATATTACAACATGTTCAGAAGAACACTCTGCAAAGGATACTCACCAAGCATGGGTCTCCAAATGTGAGTGCCATAAGAAGGCTATATAGAGAAATAGATCAGGATGGGGACAGTGTCGTATCAGCTTCTGAAGTGAAAGAGATGCTGCTTAAGAGCAGATCAACTGAAAAAAATATCAATGAGAAAGAAATAGAAGAAGTGTTCAGAATTTTTAACCTGAATAGTGAAGACAACAGAATAACTAAGGATGAATTTGTGAGTGGCTTCATAAAATGGTTGGACCAAACCAAGCTTGCTTTGAATAGACGGTATATGTCAAGGAAATCACTCAAGGAGATATATCAGGTTTTTGAGCCGTGGATAGAAAACAAACGAAGAGAACAAGAAATGAAGAAACATCTTATATATGAACTCTTAAAGAATATTCAGAGTGATATGGTTGGCGACCTTCTCACTGAAGATGGCAAACCTGATGAACTTGCTATAAGAAGGTTGTTTGAAAAGATCGACAGCAATAAAGATAACTGCATTTCCCAGTCTGAGTTAAGAGAACTACTCACAAAGATCAATTTTGTTAACGTACCAATAGATGTGGAGGAAGCAGTTAATAAAGTCATCGAAGAACTTGACCTTAACAGTGACCATGTCATTAGTGAGGAGGAATTTGTTTCTGGGTTTGAAAAATGGCTCAGCTCATCTTCCAGTCCTGTTCTTCTCTCAGATTCTGAGAGTCAAGAAGATATATTTCAAATGTGGGAAGAGACTGACATGGTGGTGGAAGAGAATCAAAGCAAAGCAGTAGTTGATAGATCAATATGGGCATGGTTCAAGGCTATACTATATGTGGTGGTGGGAATTGCTATGTTATCTGTTCTTGCAGAGCCCCTTATAGAAAGTGTCCGCAAGTTCTCAAACAGTGCAGGAATTAATGCATTCTTCATCTCATTTATCCTAGTCCCACTGGCTACAAATGCTAAAAAAGCTACTTTTGCAATCAAAGAAACAAGTCATAAGAAGCCAAGAACTACTTCTCTCACCATTTCTGAGGTTAACATACGTATTTTATTTATTCAAAAATCTTGA 1959 0.3808 MKRSIFRKTCFILLFLLFVVTIEVEGRHLKHTNFDNELVSDGVDDDNGQPRKASYLLLKGVESNPQEEEECKQMYGFLPCSNSIFGHLFLILVYEYFLFHGESYLADGGEQIFRILGPGVFGASAFNILSALPESLILLVSGLLSSKEIAQEYAFTGVGLLAGSSILLLTVVWGTCIITGGQQFKNDSSLRIFDGSNSLPRRLKAFLTGYGITTDLETSYTARIMVFSVIPLIIMQIPNLLQFSSGPRTVTLIVALIITVVFLLLYFTYQIFEPWIQKRRLEYVKHDHLLVRILQHVQKNTLQRILTKHGSPNVSAIRRLYREIDQDGDSVVSASEVKEMLLKSRSTEKNINEKEIEEVFRIFNLNSEDNRITKDEFVSGFIKWLDQTKLALNRRYMSRKSLKEIYQVFEPWIENKRREQEMKKHLIYELLKNIQSDMVGDLLTEDGKPDELAIRRLFEKIDSNKDNCISQSELRELLTKINFVNVPIDVEEAVNKVIEELDLNSDHVISEEEFVSGFEKWLSSSSSPVLLSDSESQEDIFQMWEETDMVVEENQSKAVVDRSIWAWFKAILYVVVGIAMLSVLAEPLIESVRKFSNSAGINAFFISFILVPLATNAKKATFAIKETSHKKPRTTSLTISEVNIRILFIQKS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0378 652 Gene3D - 268 386 - -
Dere08g0378 652 Gene3D - 387 528 - -
Dere08g0378 652 ProSiteProfiles EF-hand calcium-binding domain profile. 489 524 IPR002048 GO:0005509
Dere08g0378 652 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Dere08g0378 652 CDD EFh 454 518 IPR002048 GO:0005509
Dere08g0378 652 ProSiteProfiles EF-hand calcium-binding domain profile. 312 347 IPR002048 GO:0005509
Dere08g0378 652 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 74 642 IPR004713 GO:0006812|GO:0008324|GO:0016020
Dere08g0378 652 ProSitePatterns EF-hand calcium-binding domain. 502 514 IPR018247 -
Dere08g0378 652 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Dere08g0378 652 SMART efh_1 316 344 IPR002048 GO:0005509
Dere08g0378 652 SMART efh_1 355 384 IPR002048 GO:0005509
Dere08g0378 652 SMART efh_1 453 481 IPR002048 GO:0005509
Dere08g0378 652 SMART efh_1 493 521 IPR002048 GO:0005509
Dere08g0378 652 SUPERFAMILY EF-hand 315 523 IPR011992 -
Dere08g0378 652 Pfam EF-hand domain pair 453 516 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0378 Dere-ChrDere08 6280539 6285177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0378 405 642 EF-hand Containing Proteins AT1G53210 36.400 6.55e-40 152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0378 08 6280539 6285177 Dere08g0378 08 6280539 6285177 ECH