Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0336 ATGTTTGATAGTAGAAGAAAAAGATCCAGCGGTTCCCCTGTCAGCGAACACGACCCTCTTCCTCCCTCCCTCTCTCTTTCTGGATCTGAATTTGAATCTACCTCTCCTTCAATCGCTGATCTCGAATACGTGCCTTCGTCTTCGCTTGGAAAGATGGGAGGTGGATTTAGAGTGCTTCACCTAGTTAGACCGTTTCTCTCTTTTCTGCCTGAAGTTCAGACTGCTGACAGGAAAATTCCATTTAGGGAGAAGGTCATATACACTGTGATCTCTCTGTTCATTTTCCTGGTTTGTAGTCAGCTCCCCTTGTATGGAATACACTCAACAACTGGTGCAGATCCATTCTATTGGATGCGTGTTATACTTGCTTCAAACCGTGGAACTGTTATGGAGCTTGGAATAACGCCTATCGTTACTTCTGGGCTGGTGATGCAACTGCTTGCTGGTTCAAAGATCATTGAAGTGGACAACAATGTACGTGAAGATCGTGCGCTCCTAAATGGAGCACAGAAGCTCCTTGGCATCTTGATAGCTATTGGAGAGGCAGTTGCCTATGTTCTTTCTGGGATGTATGGTAGTGTGGGCCAACTTGGAGTAGGGAATGCCATACTCATCATCATTCAGCTTTGCTTTGCTGGTATCATTGTGATATGTTTGGATGAGCTTCTTCAGAAAGGATATGGTCTGGGGTCTGGAATTTCCCTATTCATTGCAACGAACATCTGTGAAAATATTATATGGAAGGCATTTAGTCCTACCACTATTAACAGTGGACGAGGTGCTGAATTTGAGGGTGCTGTTATTGCTTTATTCCATTTGTTGATAACTAGAACAGATAAGGTTCGTGCCCTGCGCGAGGCATTTTACAGGCAGAATCTTCCCAATGTGACAAATCTTCTTGCTACTGTCTTGATCTTCCTAATTGTGATATACTTCCAAGGTTTCCGTGTGGTTTTGCCAGTAAGATCAAAGAATGCCCGTGGACAGCAGGGTTCATACCCTATTAAACTATTCTATACCTCTAACATGCCCATTATTCTTCAGTCTGCTCTTGTTTCTAATCTCTACTTCATCTCTCAGCTGCTTCACCGAAAGTACAGTGGAAACTTCTTTGTGAACTTGTTGGGTAAATGGAAGGAGACTGAATATGGAGGTGGTCAGTCTATTCCTGTTGGTGGTCTTGCATACTACATCACAGCACCGTCTAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCTTTGTTCTATCTTGTGTTCATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGATCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGGAACAACAAATGGTGATGCCTGGGCACCGTGAGTCAAATTTGCAGAAAGAGCTGAACCGATATATTCCCACTGCTGCAGCATTCGGAGGCATTTGTATTGGTGCCCTGACTGTGTTAGCTGATTTCATGGGGGCAATTGGTTCTGGTACAGGGATATTACTTGCAGTAACAATTATCTATCAGTACTTCGAGACATTTGAGAAGGAGAGAGCTAGTGAGCTTGGCTTCTTTGGTTTCTAA 1584 0.4388 MFDSRRKRSSGSPVSEHDPLPPSLSLSGSEFESTSPSIADLEYVPSSSLGKMGGGFRVLHLVRPFLSFLPEVQTADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVNLLGKWKETEYGGGQSIPVGGLAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0336 527 FunFam Transport Sec61 subunit alpha isoform 2 60 525 - -
Dere08g0336 527 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 69 521 IPR002208 GO:0015031|GO:0016020
Dere08g0336 527 MobiDBLite consensus disorder prediction 1 31 - -
Dere08g0336 527 Gene3D SecY subunit domain 60 525 IPR023201 -
Dere08g0336 527 Pfam SecY 128 510 IPR002208 GO:0015031|GO:0016020
Dere08g0336 527 NCBIfam preprotein translocase subunit SecY 82 518 IPR002208 GO:0015031|GO:0016020
Dere08g0336 527 ProSitePatterns Protein secY signature 1. 128 147 IPR030659 -
Dere08g0336 527 Pfam Plug domain of Sec61p 93 127 IPR019561 -
Dere08g0336 527 SUPERFAMILY Preprotein translocase SecY subunit 61 517 IPR023201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0336 Dere-ChrDere08 5806073 5811407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0336 52 527 Miscellaneous Gene Families AT1G29310 93.908 0.0 913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0336 08 5806073 5811407 Dere08g0336 08 5806073 5811407 ECH