Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0286 ATGAACAAGCTTCCATTTCTGCAAGGCTGCTTCTTCCATTGTTGTCTGAAAAACTATCTCTCGTCTTGTTGTTTCTTCTTACTTATATCTGCGCCATCTTCGGATCATATTCGTAGGCGTGGATCTAGTACCAACTTATCTGTTGAGATTAAGATCAAGTTGCTTGACATGGCTACATATACCCCAAAGAATATCCTCATCACTGGGGCGGCTGGATTTATTGCATCTCATGTTGCTAACCGGCTCATCCGCAACTACTCTGACTACAAAATTGTTGTTCTAGACAAACTTGATTACTGTTCTAATTTGAAGAACCTCCTCCCTTCAAAATCATATCCCAACTTCAAGTTCGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACTGAGTCCATCGACACAATAATGCACTTTGCTGCTCAGACCCATGTTGACAACTCGTTTGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTGTTAGAAGCCTGCAAGGTCACTGGCCAGATCAGGAGGTTCATTCATGTGAGCACAGATGAGGTCTATGGGGAGACAGAAGAAGATGCTGTTGTTGGAAACCATGAGGCTTCTCAACTTCTTCCCACAAATCCATACTCTGCAACAAAAGCTGGAGCGGAAATGCTTGTCATGGCATATGGTAGGTCATATGGGTTACCTGTGATCACAACACGTGGCAATAATGTTTATGGGCCCAGTCAATTTCCTGAGAAGTTAATTCCAAAGTTCATCCTCTTAGCAATGCAAGGCAAGCCTCTTCCAATTCACGGGGATGGTTCTAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCATAAGGGAGAGGTTGGACATGTTTACAATATTGGGACTACAAGAGAAAGGAGAGTTATTGATGTAGCCAAAGATATATGCAGACTGTTCTCAATGGACCCTGATACTAGCATAAAATTTGTAGAGAACAGACCATTTAATGACCAAAGATACTTTCTTGATGATCAAAAGCTGAAGAACTTGGGTTGGTCTGAGAGGACCACATGGGAAGAAGGGCTGAAGAAAACCATAGATTGGTATACTAAGAATCCTGATTGGTGGGGTGATGTCAGCGGCGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCAGGTGGGATGGAGAGACATATTGAAGGCTCTGAAGAAGATAAGCCCACATCCTATGTCTCCAGTAATACTCGAATGGTGGTTCCAACATCTAAGAACACTGGTGCACAGCAGAAACATGCTTATAAGTTCTTGATCTATGGTAGAACAGGGTGGATTGGGGGTCTGTTGGGGAAACTCTGTGAAAAACAAGGGATTCCATTTGAATATGGAAAAGGGCGCCTAGAGGATCGCTCATCACTCGTGGCAGATATCCACAATGTTAAGCCTACACATGTTTTCAATGCTGCTGGAGTGACTGGCAGACCCAATGTTGACTGGTGTGAATTTCATAAAACGGAAACCATTCGCACCAATGTTGCTGGTACTTTAACATTGGCTGATGCCTGCAGAGAGCAGGGGCTCTTGATGATGAATTATGCAACTGGATGTATATTTGAGTATGATGCAGCGCATCCAGAGGGTTCTGGCATTGGTTTTAAGGAGGAAGACAAACCCAACTTCATTGGTTCTTTCTATTCCAAAACTAAAGCTATGGTTGAAGAGCTTTTGAAAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCGTCTGATCTGAATAACCCACGCAACTTCATTACAAAGATTACTCGTTATAATAAAGTGGTTAACATTCCAAACAGCATGACCATCTTGGATGAACTGTTGCCTATTTCAATTGAAATGGCAAAGCAAAACTTGCGTGGCATTTGGAACTTTACAAACCCGGGGGCTGTGAGCCACAACGAGATCCTTGAGATGTACAGGGATTACATCGACCCCAACTTCAAGTGGGCTAACTTCACACTTGAAGAGCAAGCCAAGGTGATAATTGCTCCAAGAAGCAACAATGAGATGGATGCATCCAAGTTGAAGAAAGAGTTCCCAGAGTTGCTTCCCATCAAGGAATCACTTATCAAGTATGTCTTTGAGCCAAACAGAAAAACCAATAAAAAATAA 2184 0.4263 MNKLPFLQGCFFHCCLKNYLSSCCFFLLISAPSSDHIRRRGSSTNLSVEIKIKLLDMATYTPKNILITGAAGFIASHVANRLIRNYSDYKIVVLDKLDYCSNLKNLLPSKSYPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETEEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPSQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTTRERRVIDVAKDICRLFSMDPDTSIKFVENRPFNDQRYFLDDQKLKNLGWSERTTWEEGLKKTIDWYTKNPDWWGDVSGALLPHPRMLMMPGGMERHIEGSEEDKPTSYVSSNTRMVVPTSKNTGAQQKHAYKFLIYGRTGWIGGLLGKLCEKQGIPFEYGKGRLEDRSSLVADIHNVKPTHVFNAAGVTGRPNVDWCEFHKTETIRTNVAGTLTLADACREQGLLMMNYATGCIFEYDAAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKITRYNKVVNIPNSMTILDELLPISIEMAKQNLRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWANFTLEEQAKVIIAPRSNNEMDASKLKKEFPELLPIKESLIKYVFEPNRKTNKK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0286 727 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 56 388 IPR036291 -
Dere08g0286 727 Pfam GDP-mannose 4,6 dehydratase 66 371 IPR016040 -
Dere08g0286 727 Gene3D - 256 378 - -
Dere08g0286 727 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 436 716 IPR036291 -
Dere08g0286 727 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 59 394 - -
Dere08g0286 727 Pfam RmlD substrate binding domain 441 613 IPR029903 -
Dere08g0286 727 CDD dTDP_GD_SDR_e 63 380 IPR005888 GO:0008460|GO:0009225
Dere08g0286 727 CDD dTDP_HR_like_SDR_e 441 713 - -
Dere08g0286 727 Gene3D - 429 727 - -
Dere08g0286 727 NCBIfam dTDP-glucose 4,6-dehydratase 64 384 IPR005888 GO:0008460|GO:0009225
Dere08g0286 727 Gene3D - 65 369 - -
Dere08g0286 727 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 431 727 - -
Dere08g0286 727 FunFam UDP-glucose 4,6-dehydratase 65 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0286 Dere-ChrDere08 5051474 5054651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0286 64 375 Miscellaneous Gene Families AT4G00110 27.246 1.77e-20 93.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0286 08 5051474 5054651 Dere08g0286 08 5051474 5054651 ECH