Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1897 ATGGATGGGTATGAAGCTACAAGAATTGTGTTCTCACGGATCCAAAACTTGGACCCTGAGAATGCTTCCAAAATCATGGGTCTGCTCCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGATTAGCATTTGGTCCTGAAGCTCTGGTTCACTCTGTGATTGTCAAAGCTCGCAAAGACTTGGGATTGTCCTCGTACTCTCCGTCCACACCCTCCACTCCTCCTCCAACTTCATCTCCTTCTCCTTTTCTTTCCAGACAAAATTCTACTCCTTCAAGACTCCTAAACACTACTGGAATCAACCTTCCTCCTCCTGCTCTTACAATCCCAAACCCTCCTTCTTCTTCAGCTTCTTGGACTGAGGATTTGATGAGCCCAAACAACAATTTACTTGTTGGCTCTAATTCTCCCCATATGAACATTCCATCATCATCTTCCTTACCCTTTTATGGGTCTGATCCAATTGATGAGTTTCAACTTCAGGACCAGCTTTCCTTCCTCAATGATGGGTCTCCTACTCTCGGCAGGAAAAACCCAGATTTGTTCTACCCTCAATCTGACTTATCTTCAAGTCCTACCGGCGGGGACGCCACCATTTTTCCGTCGTACGGGTGGGGCGGGTCCGTCCATCGCCGGAGCTGCTCCGTCAACGACGCCTGTATGTCTGAGGATCCGAATTCTGGGTTGGGTTGGAAGCCTTGTCTTTATTTTGCTAGAGGGTATTGTAAAAATGGTACTAGTTGTAGGTTTCTTCATGGAGGTGGGATTGGAGATTCTGAAGGTGTCTCAATGGTTGGGTCTCCTAGTAAGATTGAGATGATGGACCAGAGCAGCCATGAGCTTCTCAGATCTAAAACTGCTCAACAACAAAGATTGCTCATGGCTTCTTCTCTGCCTTACTCCCCAAAGTGCATGAATTTTCTACTGCAACAGCAGCAAAATGATTCCCAAAGAGCTGCTGCTGCACTTATGATGAACGAGGATTTGCACAAGTTTGGGCGATCCAGGCTAGAAAGAAACGATTTTTCACTCAATGGAGGTTCTGGAATAGGAAACCCAGCTTCGAGGCAGATCTACTTGACCTTTCCAGCTGATAGCACTTTCAGAGAGGAAGATGTTTCAAACTACTTCAGCATTTATGGACCTGTTCAAGATGTGAGGATCCCATACCAGCAGAAGCGCATGTTTGGTTTTGTGACCTTTGTTTATCCCGAAACAGTGAAGCTCATTCTGTCTAAGGGAAACCCTCATTTCGTTTGTGATGCTCGCGTGTTAGTCAAGCCTTACAAAGAAAAAGGCAAAGTCCCAGACAAGAAACAGGTGGAAAGGGGGGATTTCTCACCATGCGGTACTCCTACTGGACTTGATGCTAGAGACCCATTTGATCTTCAACTTGGAGCGAGAGTGTACTATAATACTCAAGATATGCTGTGGAGGAGGAAGTTGGAGGAGCAATCTGATTTGCAGCAAGCTCTTGAGCTGCAAAGTAGAAGGCTAATGGGTCTGCAACTTCTTGACATAAAGAAGCAACACCAGAGAGCATTTTCCACAGGAAGTCCAATTCCTTCTCCTACGCACTCTCCAAACATTTTCAGTCAGACTCTTGTTCTTCCTTCATTTCATGGCGGCAGCTCTGAGGCCGGCCCAGAGGAGAGTGTTATAAGCTCTGCTCCTGCTAGCACTGCACCCATTCCTGTCCTTAAGCAGCCGCCATTGCAGCCAAAGCCTTGGAGGTGA 1737 0.464 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLSSYSPSTPSTPPPTSSPSPFLSRQNSTPSRLLNTTGINLPPPALTIPNPPSSSASWTEDLMSPNNNLLVGSNSPHMNIPSSSSLPFYGSDPIDEFQLQDQLSFLNDGSPTLGRKNPDLFYPQSDLSSSPTGGDATIFPSYGWGGSVHRRSCSVNDACMSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGGIGDSEGVSMVGSPSKIEMMDQSSHELLRSKTAQQQRLLMASSLPYSPKCMNFLLQQQQNDSQRAAAALMMNEDLHKFGRSRLERNDFSLNGGSGIGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQVERGDFSPCGTPTGLDARDPFDLQLGARVYYNTQDMLWRRKLEEQSDLQQALELQSRRLMGLQLLDIKKQHQRAFSTGSPIPSPTHSPNIFSQTLVLPSFHGGSSEAGPEESVISSAPASTAPIPVLKQPPLQPKPWR 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1897 578 MobiDBLite consensus disorder prediction 564 578 - -
Dere07g1897 578 ProSiteProfiles Zinc finger C3H1-type profile. 228 255 IPR000571 GO:0046872
Dere07g1897 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 413 IPR000504 GO:0003723
Dere07g1897 578 MobiDBLite consensus disorder prediction 82 104 - -
Dere07g1897 578 Gene3D - 222 318 - -
Dere07g1897 578 SMART c3hfinal6 230 254 IPR000571 GO:0046872
Dere07g1897 578 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 253 IPR000571 GO:0046872
Dere07g1897 578 MobiDBLite consensus disorder prediction 538 578 - -
Dere07g1897 578 SUPERFAMILY RNA-binding domain, RBD 367 446 IPR035979 GO:0003676
Dere07g1897 578 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 544 - -
Dere07g1897 578 MobiDBLite consensus disorder prediction 64 120 - -
Dere07g1897 578 SUPERFAMILY CCCH zinc finger 231 253 IPR036855 GO:0046872
Dere07g1897 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 432 IPR000504 GO:0003723
Dere07g1897 578 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 363 434 - -
Dere07g1897 578 Gene3D - 355 450 IPR012677 -
Dere07g1897 578 SMART rrm1_1 357 427 IPR000504 GO:0003723
Dere07g1897 578 CDD RRM_AtC3H46_like 358 427 IPR034365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1897 Dere-ChrDere07 30993914 30996179 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1897 07 30993914 30996179 Dere07g1897 07 30993914 30996179 ECH