Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1237 ATGTTATTAGTTAATTTATTTATTTTTCACCATGGACCCGAATGCGTTGCACCTGCGGGCTTGTTCGCTCACCAGTCCCACTTGAACAAAGGCATTCAGCTCTTGTACCCTCACTCTGTCTCGCTCGCTCACTCACACTTTCTTGCTTTTTTTCTCGGAAAGTTCAGAGAGAAAATGGTGAACCCCTCGATGCTTGGATCCTTGCGTTCAGCCGTAGCTCGCGGCTCCTCTCATCTCGCACGCCGTGGCTATTCCGTCGAGGCCGTCCCTGAGCGGAAGGTGGCCATCCTCGGAGCCGCCGGCGGGATTGGTCAGCCCCTATCGTTGCTGATGAAGCTCAACCCCCTTGTTTCTAGTCTTTCACTGTATGATATCGCCGGGACCCCCGGTGTCGCGGCTGATGTCAGCCACATCAACACCAGATCTGAGGTCGTTGGATACCAAGGTGAAGATGAGCTTGGGAAAGCTTTGGAAGGAGCAGATGTTGTTGTTATTCCCGCTGGTGTGCCCAGAAAGCCTGGAATGACACGTGATGATCTTTTCAATATCAATGCGGGCATTGTCAAATCCCTTTGTGCTGCTATTTCCAAGTACTGTCCCAACGCCCTTGTTAACATGATAAGCAATCCTGTGAATTCCACTGTTCCAATTGCTGCTGAGGTTTTCAAGAAAGCCGGGACATATAATGAAAAGAAGTTGTTTGGTGTCACTACCCTTGATGTTGTTAGGGCAAAAACTTTCTATGCTGGGAAGGCCAAAGTTCCAGTTGCTGAGGTTGATGTACCTGTTGTAGGTGGTCATGCAGGCATAACTATTCTGCCACTATTTTCTCAGGCAACTCCAAAAGCCAATCTGGGTGATGACGACATTAAGGCTCTGACAAAAAGAACACAAGATGGAGGAACAGAAGTTGTGGAAGCAAAGGCTGGAAAGGGTTCTGCAACATTGTCAATGGCTTATGCTGGAGCGCTTTTTGCTGACGCTTGCCTCAAGGGACTTAATGGGGTCCCAGATGTAGTCGAGTGCTCGTTTGTGCAATCCAATGTCACTGAGCTGCCTTTCTTTGCTTCCAAGGTGAGGCTTGGGAAAGATGGTGTGGAGGAAGTTCTGGGCTTGGGTCCTCTTTCAGATTATGAAAAACAAGGCCTTGACAGCCTTAAGCCTGAACTCAAAGCCTCTATCGAGAAGGGAATTAACTTTGCCAACAAGAGTTAG 1215 0.4864 MLLVNLFIFHHGPECVAPAGLFAHQSHLNKGIQLLYPHSVSLAHSHFLAFFLGKFREKMVNPSMLGSLRSAVARGSSHLARRGYSVEAVPERKVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVVGYQGEDELGKALEGADVVVIPAGVPRKPGMTRDDLFNINAGIVKSLCAAISKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKAKVPVAEVDVPVVGGHAGITILPLFSQATPKANLGDDDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSNVTELPFFASKVRLGKDGVEEVLGLGPLSDYEKQGLDSLKPELKASIEKGINFANKS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1237 404 FunFam Malate dehydrogenase 237 403 - -
Dere07g1237 404 NCBIfam malate dehydrogenase 93 402 IPR010097 GO:0006099|GO:0030060
Dere07g1237 404 CDD MDH_glyoxysomal_mitochondrial 93 401 IPR010097 GO:0006099|GO:0030060
Dere07g1237 404 ProSitePatterns Malate dehydrogenase active site signature. 236 248 IPR001252 GO:0006108|GO:0016615
Dere07g1237 404 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 93 235 IPR036291 -
Dere07g1237 404 PANTHER MALATE AND LACTATE DEHYDROGENASE 79 403 - -
Dere07g1237 404 Pfam lactate/malate dehydrogenase, NAD binding domain 93 235 IPR001236 GO:0016491
Dere07g1237 404 Gene3D - 91 236 - -
Dere07g1237 404 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 237 400 IPR022383 GO:0016616
Dere07g1237 404 SUPERFAMILY LDH C-terminal domain-like 236 402 IPR015955 GO:0003824|GO:0016616
Dere07g1237 404 FunFam Malate dehydrogenase 90 236 - -
Dere07g1237 404 Gene3D - 237 403 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1237 Dere-ChrDere07 15986392 15989446 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1237 07 15986392 15989446 Dere07g1237 07 15986392 15989446 ECH