Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1128 ATGTTGAAGCTCAACGTTGTTGTAGTTCTAGGGGTGATAACGTTGGTGGTGGCGAAATATGTGAGTGGTCAAAACTGTGGGTGCGACACAGGCTTATGCTGCAGCCAATATGGGTATTGTGGGACGGGTGACGATTACTGTGGCACAGGGTGCAGCGAAGGTCCTTGTTATGGAAGTTCCGGCACCACCAACGACTTCGTGGTGGCTGACGTCGTCACGTCGGAGTTCTTCGACGCCATAATTGACAAGGCAGACGATAACTGTGCCGGCAAGAACTTCTACTCGCGAGACGCCTTTATCGACGCTCTCTATTCTTACGAACAGTTCGGTAGAATTGGTAATGCTGATGACTCCAAGCGTGAGATTGCAGCTGCTTTTGCCCATTTCACTCATGAAACTGGACACTTTTGCTACATAGAGGAGATAAATGGTCCGTCCAAGGACTACTGCGACGAAAGCAACACACAGTATCCGTGTGCCCCCGGCAAGGGGTACTATGGTCGTGGACCAATCCAGCTATCATGGAACTTCAACTACGGACCAGCCGGAGAGAGCAATGGGTTCGATGGGTTGAACTCACCAGAAACTGTGGCCAACGACCCAGTGGTGTCCTTCAAGACTGGGTTATGGTACTGGATGAATACAGTGAGGCCTGTGCTAGATCAAGGGTTTGGAGCTACCATTAGAGCCATCAATGGCCCTCTTGAATGCGATGGTGCTAACCCCAACACTGTTCAGTCTCGCGTTAATTACTACACTCAGTACTGTTCTCAACTGGGTGTTGATCCTGGTGATAATCTTACTTGCTAG 810 0.5 MLKLNVVVVLGVITLVVAKYVSGQNCGCDTGLCCSQYGYCGTGDDYCGTGCSEGPCYGSSGTTNDFVVADVVTSEFFDAIIDKADDNCAGKNFYSRDAFIDALYSYEQFGRIGNADDSKREIAAAFAHFTHETGHFCYIEEINGPSKDYCDESNTQYPCAPGKGYYGRGPIQLSWNFNYGPAGESNGFDGLNSPETVANDPVVSFKTGLWYWMNTVRPVLDQGFGATIRAINGPLECDGANPNTVQSRVNYYTQYCSQLGVDPGDNLTC 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1128 269 CDD ChtBD1 28 51 - -
Dere07g1128 269 PIRSF Endochitinase 1 269 IPR016283 GO:0004568|GO:0005975
Dere07g1128 269 Gene3D Endochitinase, domain 2 140 197 - -
Dere07g1128 269 PANTHER CHITINASE-RELATED 8 269 - -
Dere07g1128 269 ProSitePatterns Chitin recognition or binding domain signature. 28 47 IPR018371 GO:0008061
Dere07g1128 269 PRINTS Chitin-binding domain signature 26 34 IPR001002 GO:0008061
Dere07g1128 269 PRINTS Chitin-binding domain signature 34 41 IPR001002 GO:0008061
Dere07g1128 269 PRINTS Chitin-binding domain signature 41 48 IPR001002 GO:0008061
Dere07g1128 269 ProSitePatterns Chitinases family 19 signature 1. 88 110 IPR000726 GO:0004568|GO:0006032|GO:0016998
Dere07g1128 269 Gene3D - 20 67 IPR036861 GO:0008061
Dere07g1128 269 FunFam Class IV chitinase 20 69 - -
Dere07g1128 269 SUPERFAMILY Plant lectins/antimicrobial peptides 24 60 IPR036861 GO:0008061
Dere07g1128 269 Pfam Chitinase class I 222 269 IPR000726 GO:0004568|GO:0006032|GO:0016998
Dere07g1128 269 Pfam Chitinase class I 71 215 IPR000726 GO:0004568|GO:0006032|GO:0016998
Dere07g1128 269 FunFam Endochitinase (Chitinase) 140 199 - -
Dere07g1128 269 Pfam Chitin recognition protein 25 56 IPR001002 GO:0008061
Dere07g1128 269 SUPERFAMILY Lysozyme-like 68 269 IPR023346 -
Dere07g1128 269 ProSitePatterns Chitinases family 19 signature 2. 203 213 IPR000726 GO:0004568|GO:0006032|GO:0016998
Dere07g1128 269 Gene3D - 68 269 - -
Dere07g1128 269 SMART ChitinBD_3 25 56 IPR001002 GO:0008061
Dere07g1128 269 ProSiteProfiles Chitin-binding type-1 domain profile. 23 58 IPR001002 GO:0008061
Dere07g1128 269 CDD chitinase_GH19 72 269 - -
Dere07g1128 269 FunFam Endochitinase PR4 62 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1128 Dere-ChrDere07 14636885 14638234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1128 1 269 Glycoside Hydrolase AT3G54420 64.964 2.66e-135 381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1128 07 14636885 14638234 Dere07g1128 07 14636885 14638234 ECH