Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1034 ATGCAAGCTCTCCATTCCACGGCCATCTCTTATACTCTCTCTAAAACCCTAAACCTCATTTTCCCAGTCCCCACCACTCATTCTCTCTGTCTCCCAATTCTTCCTCCACCTTCTCTCTCCCTTTCTCACCGCAATTCCTTCTTTTTCTCTCGCCGGATTTTTCCCCGCTCCACGCCCCGGTTGTGTGCCAGTGAGTTCTCAGGCAGTGCCGGCTCTGAAGAGGAAGAAGAAAGACTCGAGGAATTCGAAGACGAAGACGAAATTGATTATTCTGTCAGCGACAATTATGATGTCGATGTCGCCGCCCTTGAGGAAGAAGCGAAGGACGCAGTCCGAGAGTACTCAGACTCTTTGTCTCGCATTTTGAGAATTGAAGACGAGAAAAATGACCACAAGGAAACTGCTCAAACGCGAAAGAGGAGTAAAAGTAGAACAAGCAACGTCCCTGACAATCTTCTCCCAAGGGTTGCAATTGTTGGAAGGCCAAATGTTGGCAAATCAGCATTATTTAATCGTCTTGTTGGGGGAAACAAGGCAATTGTGGTGGATGAACCTGGGGTTACTAGGGATCGCTTATATGGAAGATCATTTTGGGGAGACCATGAATTCATGGTGGTGGACACAGGTGGGGTTCTCACTATTTCAAAATCACAGGCTGGTGTTATGGAAGAGCTGGCAATTACTACTACCATTGGTATGGATGGCATTCCACTTGCCTCTAGAGAGGCAGCTGTTGCCAGGATGCCCTCAATGATTGAGAGACAAGCTATTGCAGCTGTGGAAGAATCATCTGTTATTATTTTCCTTGTTGATGGCCAGGCAGGTCTAATGGCAGCTGATGTGGAGATTGCTGATTGGCTACGTAAGAACTACTCCAATAAATGTGTCATCCTAGCAGTTAACAAGTGTGAATCTCCACGGAAAGGAATTATACAAGCATCTGAATTTTGGTCTCTTGGGTTTGAACCAATTCCTGTGTCAGCTATATCAGGTACCGGAACTGGAGTGCTCCTTGACCTTGTTTGCTCGGGTTTGGAGAAAATTGAGGAATCAGAGAATCTTGACAAGGAAGAAGACTATGTTCCTGCAATGTCAATTGTTGGTAGACCTAATGTTGGGAAAAGTAGCATTTTGAATGCATTAATTGGTGAGGACAGAACAATAGTAAGCCCCATTAGTGGCACTACCCGTGATGCTATTGATAGTGAATTTACTGGAGCAGATGGCCAGAAGTTTCGCCTTATTGATACTGCTGGAATCAGGAAAAGGGCAGCCATAGCCTCAGCAGGTAGTACAACAGAGGCTCTGTCGGTGAATCGAGCATTTCGTGCTATTCGCCGTTCCGATGTCATTGCTCTTGTCATTGAGGCCATGGCTTGTATCACAGAACAGGACTGCAAGATAGCTGAAAGGATAGAAAGAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAATAAAAACCAGCAGACTGCAACATACTATGAGCAAGATGTCAGGGAGAAGCTCCGTTTACTTAACTGGGCTCCAATTGTTTATTCTACTGCAATAGCTGGTCAAAATGTTGACAAGATTATTGTAGCTGCTAGTACAGTTGAAAAGGAGAGATCAAGAAGACTTGGTACTTCTATATTAAATCAAGTAGTGCAGGAAGCAGTGGCTTTCAAGCCACCTCCCAGGACACGAGGTGGAAAAAGAGGGCGAGTTTACTATTGCACTCAGGCTGCTATAAGGCCGCCTACATTTGTTTTCTTTGTCAATGATGCAAAACTTTTTCCTGAGACTTACCGCCGTTATATGGAGAGACAACTGCGTTCAGATGCAGGTTTTTCAGGTACACCCATTCGGCTTCTGTGGCGCAGCAGAAGGAAAATGGGAAAAGATGAAGGCAAAGCTGAAACAAGGACACAAGTGAACCTTCCATCACGTGATCGACGTGACAGAAAATTGATGTCAACTACCCCGTAG 1983 0.4508 MQALHSTAISYTLSKTLNLIFPVPTTHSLCLPILPPPSLSLSHRNSFFFSRRIFPRSTPRLCASEFSGSAGSEEEEERLEEFEDEDEIDYSVSDNYDVDVAALEEEAKDAVREYSDSLSRILRIEDEKNDHKETAQTRKRSKSRTSNVPDNLLPRVAIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRSFWGDHEFMVVDTGGVLTISKSQAGVMEELAITTTIGMDGIPLASREAAVARMPSMIERQAIAAVEESSVIIFLVDGQAGLMAADVEIADWLRKNYSNKCVILAVNKCESPRKGIIQASEFWSLGFEPIPVSAISGTGTGVLLDLVCSGLEKIEESENLDKEEDYVPAMSIVGRPNVGKSSILNALIGEDRTIVSPISGTTRDAIDSEFTGADGQKFRLIDTAGIRKRAAIASAGSTTEALSVNRAFRAIRRSDVIALVIEAMACITEQDCKIAERIEREGKGCVIVVNKWDTIPNKNQQTATYYEQDVREKLRLLNWAPIVYSTAIAGQNVDKIIVAASTVEKERSRRLGTSILNQVVQEAVAFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFPETYRRYMERQLRSDAGFSGTPIRLLWRSRRKMGKDEGKAETRTQVNLPSRDRRDRKLMSTTP 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1034 660 Hamap GTPase Der [der]. 153 628 IPR016484 GO:0005525
Dere07g1034 660 MobiDBLite consensus disorder prediction 65 84 - -
Dere07g1034 660 PANTHER GTPASE DER 128 648 - -
Dere07g1034 660 Gene3D - 359 541 IPR027417 -
Dere07g1034 660 FunFam GTPase Der 540 628 - -
Dere07g1034 660 NCBIfam ribosome biogenesis GTPase Der 247 624 IPR016484 GO:0005525
Dere07g1034 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 347 IPR027417 -
Dere07g1034 660 CDD EngA2 364 537 - -
Dere07g1034 660 FunFam GTPase Der 357 539 - -
Dere07g1034 660 Pfam KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 544 625 IPR032859 -
Dere07g1034 660 Gene3D - 544 628 IPR015946 -
Dere07g1034 660 CDD EngA1 157 345 - -
Dere07g1034 660 Pfam 50S ribosome-binding GTPase 155 302 IPR006073 GO:0005525
Dere07g1034 660 Pfam 50S ribosome-binding GTPase 365 485 IPR006073 GO:0005525
Dere07g1034 660 NCBIfam small GTP-binding protein domain 364 531 IPR005225 GO:0005525
Dere07g1034 660 FunFam GTPase Der 151 352 - -
Dere07g1034 660 PRINTS GTP1/OBG GTP-binding protein family signature 253 271 IPR006073 GO:0005525
Dere07g1034 660 PRINTS GTP1/OBG GTP-binding protein family signature 156 176 IPR006073 GO:0005525
Dere07g1034 660 ProSiteProfiles EngA-type guanine nucleotide-binding (G) domain profile. 362 542 IPR031166 GO:0005525
Dere07g1034 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 631 IPR027417 -
Dere07g1034 660 MobiDBLite consensus disorder prediction 626 660 - -
Dere07g1034 660 Coils Coil 93 120 - -
Dere07g1034 660 Gene3D - 156 350 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1034 Dere-ChrDere07 13797891 13803222 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1034 07 13797891 13803222 Dere07g1034 07 13797891 13803222 ECH