Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0870 ATGGCTGCGGTTTCTGATGCGATTCAATCATCCGAATTGGTCACCACAGTGTTGAATTCAGCAAAACCCATCAAAAGCTTTGAAGATATTTATAGCCACTATGGTGATGCTATTTGGCTAATTTTGACTCATTTTGCTGCTTTTCCCCAGCTTTTCCTAGTGAATCTCATTTTGACTAATGTGGGCAGGTGGTCAAAAGTTCAAGTTCTAGCAACCCGCTTATTTGTAGGCAAAAAAATGTATTCTTTTGGCAGAAATTGCTTGAAGTATGGTAGCTGCTTCAGGTGGAAATGTTTGAGTCATCTATGCTCTGCAAACTCATGTTGGCAGCAATTTCATGAATCAGCTGTTCACTATTGTCCCATTGAACGAAAATCTAAGAAGATTTGTACTCTTTATGAGACTCAGAAAATTGACCCCTTTTCCCAAATCGCTTCTAATAAAACTTTAGGCCTGTCTGCACGCACTTGTTTTGCTTCTCGTTATTCAACCAAGCCACCTTCAAGATCCTTTCGAAGAAGATCTCGCAAGAGATTGTTAAAATCCTTAAAGCCTACTCTAGACCAAGCCCAATTCCAATTGGCCTTGTCCCAACTTTCCCCAAGGTTTACTCCTGAAGAACTCTGTAATGTAATTACTTTTCAAGAAGACCCATTAGTTTGTTTGGAGCTATTCAATTGGACATCACAACAACCCAGATTTCGGCACAATGTCTCCACTTATCATATAACCATCCAGAAGCTCGGTGCCGCAAAAATGTACCAAGAAATGGATGATATTGTCAATCAAGTGCTTGCAGTTCCATTAAATGGTTCAGAGGCACTTTACAATACTATTATATATTATTTCACTGAAGCTCGAAAGTTGACTAGAGCTGTCAATATATTTAACCACATGAAAAGTGGTAGAAATTTGAATTGCAGGCCATCTATCAGAACCTATAATATCCTTTTTTCAGCATTGTTGAACAGAGGAAGCAACTCTTACATAAATCATGCGTATATGGACACTATTAGATGTCTGTTTAAACAAATGGTCAATGATGAAATAGAGCCTGACATATTTACCTTAAATTCCATGATTAAAGGTTATGTGCTTTCTCTCCATGTTAATGATGCACTGAGGATATTCCATCAGATGGGCGTGGTTTATGCTTGTCAACCTAACTCTTTTACCTATGATTATTTGATACATGGGTTGTGTGCCCAAGAAAGAACAAATAATGCTAGAGAGTTATGTGATGAAATGAAGACCAAAGGCTTCATACCAAGTAGCAAGTCTTATAATTCACTTGTTAATGCTTTGGCACTTGGCGGAGAGGTTGGGGAGGCAATAAAATACCTGTGGGAGATGACTGAAAATGGGAGGTCAGCTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGACAAGGAAGAGTGCAGGAGGCAATGAGGTTATTGCAGGAGTTTCAAGAGAAGGACCTTGTGGATGGGCATGCTTACAGAAAACTTCTTCATGTGCTTGAAGATGACTATGGGATTTCAGTCAGCAAAGTTGATTAA 1551 0.3875 MAAVSDAIQSSELVTTVLNSAKPIKSFEDIYSHYGDAIWLILTHFAAFPQLFLVNLILTNVGRWSKVQVLATRLFVGKKMYSFGRNCLKYGSCFRWKCLSHLCSANSCWQQFHESAVHYCPIERKSKKICTLYETQKIDPFSQIASNKTLGLSARTCFASRYSTKPPSRSFRRRSRKRLLKSLKPTLDQAQFQLALSQLSPRFTPEELCNVITFQEDPLVCLELFNWTSQQPRFRHNVSTYHITIQKLGAAKMYQEMDDIVNQVLAVPLNGSEALYNTIIYYFTEARKLTRAVNIFNHMKSGRNLNCRPSIRTYNILFSALLNRGSNSYINHAYMDTIRCLFKQMVNDEIEPDIFTLNSMIKGYVLSLHVNDALRIFHQMGVVYACQPNSFTYDYLIHGLCAQERTNNARELCDEMKTKGFIPSSKSYNSLVNALALGGEVGEAIKYLWEMTENGRSADFITYRTVLDEICRQGRVQEAMRLLQEFQEKDLVDGHAYRKLLHVLEDDYGISVSKVD 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0870 516 NCBIfam pentatricopeptide repeat 461 491 IPR002885 -
Dere07g0870 516 NCBIfam pentatricopeptide repeat 355 389 IPR002885 -
Dere07g0870 516 NCBIfam pentatricopeptide repeat 391 424 IPR002885 -
Dere07g0870 516 Pfam PPR repeat 455 485 IPR002885 -
Dere07g0870 516 Gene3D Tetratricopeptide repeat domain 404 508 IPR011990 GO:0005515
Dere07g0870 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Dere07g0870 516 Gene3D Tetratricopeptide repeat domain 180 328 IPR011990 GO:0005515
Dere07g0870 516 Gene3D Tetratricopeptide repeat domain 329 403 IPR011990 GO:0005515
Dere07g0870 516 Pfam PPR repeat family 275 322 IPR002885 -
Dere07g0870 516 Pfam PPR repeat family 352 401 IPR002885 -
Dere07g0870 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Dere07g0870 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Dere07g0870 516 PANTHER ATPASE EXPRESSION PROTEIN 3 178 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0870 Dere-ChrDere07 12174053 12176055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0870 237 493 Glycosyltransferase AT1G05670 25.292 1.39e-15 77.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0870 07 12174053 12176055 Dere07g0870 07 12174053 12176055 ECH