Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0728 ATGACAGACGTTCAACCACCTTGGGTGCCTCCAATGGATGTGGATAGATGCGTGAATGGAGATGGTAGCAGCATTCTTGGAAAATTACGTTTAAAAGTTGAGAAACTTCGTAAATCATCCTTTCAGTTCCTTCCTACTCGGTTACCGACCACGAAGCCGCCGGGAATAACTGTAAGAATGGCTCCTTTTCCGTCTGAGAACGGTGTCAAAGGAGACGATGAGAGGGAGGAGGAGGAAGACGAGGAAGAAGAGGAGGAAGAGGAGGAGGAGGAGGCTGGGGAAGAGGAAGAGGAGCCGAGGCTTAAGTATCAGAGAATGGGAGGCAGCATACCTTCGCTGCTAGCAAGTGATGGGGCGTCGTGCGTCGCCGTTTCCGAGCGGATGATCGCGCTCGGGACTCATGGGGGCACCGTCCATATCCTTGATTTTCTTGGGAATCAGGTGAAAGAATTTGCTGCTCATGCTGCTGTTGTTAATGACCTTAGCTTTGACCTAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCCGTTGTAATAAACAGCCTATTCACTGCTGAAAAAGTAAAACTTGAGTATCATCACCCCACGAAGGCTATTGCGCTGGACCCAAATTATGCAAGAAAAACATCAAGGAGATTTGTTGCGGGTGGTTTAGCTGGTCATTTGTATCTTAATTCAAAGACATGGTTAGGCTATCGAGACCAGGTTTTGCACGCTGGTGAAGGTCCAATACATGCTGTGAAGTGGAGAACAAGTCTGGTTGCTTGGGCAAATGATGCAGGAGTGAAGGTTTATGATACAGCCAATGACCAGCGTATAACATTTATTGAAAAACCACTTGGGAGTCCATGCCCCGAACTTTTACTTCCTCAGTTGGTTTGGCAGGATGACACCCTCTTGGTAATTGCTTGGGGAACATCTGTCAAAATTGCATCAATAAGAAAAAATCACAGTAAAGCAGCCAATGGGATGAATCGGAAAGTCACAATGTCTCATATGAACCAGGTGGATATTGTGGCATCTTTTCAAACCACCTATTTCATCTCAGGAATTGCCCCCTTTGGCGATGCTTTGGTTGTTCTTGCTTATATACCTGGAGAAGATGGAGAAAAGGATTTTACTGGCACTGCACCTTCTTGGCAGGGCAATGCACAAAGACCAGAAGTACATGTAGTAACATGGAACAATGATGAACATTCAACTGATGCTCTACCAGTACATGGCTTTGAGCATTACAAGGCAGAGGACTATTCCCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACATTACTATATTGTGTCCCCAAAGGATGTAGTTATTGCGAAACCTAGGGATACCGAAGATCATATTGCCTGGCTTCTTCAACATGGGTGGCATGAAAGAGCTTTGGCTGCAGTTGAATCTGGTCAGGGAAGGAGTGAACTTCTCGATGAGGTGGGATCTAGGTACCTTGATCATCTAATTGTGGAAAGAAAATATTCTGAAGCCGCTTCTTTGTGTCCCAAGTTGCTGCGAGGATCGGCTTCAGCATGGGAAAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTTCCTGTATTAGTTCCCTATATGCCTACGCAAAACCCCAGACTGCGTGATACTGCTTATGAGGTTGCTCTTGTTGCATTGACCACAAATCCATCTTTTCATAAGGATCTCTTGTCCGCTGTCAAATCCTGGCCTTCTGTAATTTATAATGCTTTGCCTGTTATTTCAGCCATTGAACCTCAGCTTAGTACTTCATCCATGACTGATCCACTCAAGGAGGCATTGGCTGAGTTATATGTAATTAATGGACAATATCAGAAAGCCTTTTCATTGTATGCTGATCTTCTGAAACCTGAAATATTTGACTTCATTGATGAGCATAATCTACATGATGCAGTTCGAGAAAAGGTTGTCCAATTGATGATGCTAGATTGCAAGCGTGCCATTCCTCTATTAATCCAAAACAGGGACTCCATAAATCCACCTGAAGTTGTGGAGCAACTTCTAAATGCCGTTAATAAGCATGACTGCAGATATTTCATACATTTATACCTTCATTCATTATTTGAAGTAAAACCACATGCTGGGAAGGACTTTCATGATATGCAGGTAGAACTTTACGCAGACTATGACCCAAAGATGCTGCTGCCATTTCTTCGCAGTAGTCAACACTATACCCTTGAGAAGGCATATGAAATTTGCATCAAAAGAGATCTATTGAAGGAGCAAGCCTTCATCCTAGGAAGGATGGGAAACTCTAAACAAGCCTTATCAGTTATTATTGATGTATTAGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAACATGATGATGAACTTTGGGAAGAACTAATCAAGCAATGTCTACACAAACCTGAAATGGTGGGCATTCTATTGGAACACACAGTTGGGAATCTTGATCCCCTCTATATAGTGAATAAGGTTCCCAATGGGTTGGAAATACCTCGACTTAGGGATCGGCTGGTTAAAATTTTCACTGATTACAGGACTGAAACATCACTCAGACATGGGTGTAATGATATCCTCAAGGCCGACTGTGTCAACCTTTTAGTTAAGTATTACAAGGAGGCCAGGCATGGAGTTTATCTAAGTAATGAAGATAAGCCCCGAGCTAAAAGGAGTAACGCTCATTCTTTTCATGTGGTTGAGAAATCTCAAAGTCTGAGTCACGTGGAAGCGAAGTCCAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTTGACCCATTTTCTATACAGAATGTATCAGTCATTGCTTTCTTTTGCTGTCACGCTTATCACTCAACTTGTCTGATGCATTCCTCCGACACTAATAGTAGCAATGAAGGGATTGAGGTCACTTCTGGAGAGGCAGAAACATATGATGTTTACAATAATTATGTGGATGATGAAGAAACCGAGCTGAGTGGTCCTCGTATGCGTTGTGTATTGTGTACTACTGCTGCTAGTTGA 3030 0.4353 MTDVQPPWVPPMDVDRCVNGDGSSILGKLRLKVEKLRKSSFQFLPTRLPTTKPPGITVRMAPFPSENGVKGDDEREEEEDEEEEEEEEEEEAGEEEEEPRLKYQRMGGSIPSLLASDGASCVAVSERMIALGTHGGTVHILDFLGNQVKEFAAHAAVVNDLSFDLEGEYIGSCSDDGSVVINSLFTAEKVKLEYHHPTKAIALDPNYARKTSRRFVAGGLAGHLYLNSKTWLGYRDQVLHAGEGPIHAVKWRTSLVAWANDAGVKVYDTANDQRITFIEKPLGSPCPELLLPQLVWQDDTLLVIAWGTSVKIASIRKNHSKAANGMNRKVTMSHMNQVDIVASFQTTYFISGIAPFGDALVVLAYIPGEDGEKDFTGTAPSWQGNAQRPEVHVVTWNNDEHSTDALPVHGFEHYKAEDYSLAHAPFSGSSYAGGQWAAGDEPHYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHERALAAVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTQNPRLRDTAYEVALVALTTNPSFHKDLLSAVKSWPSVIYNALPVISAIEPQLSTSSMTDPLKEALAELYVINGQYQKAFSLYADLLKPEIFDFIDEHNLHDAVREKVVQLMMLDCKRAIPLLIQNRDSINPPEVVEQLLNAVNKHDCRYFIHLYLHSLFEVKPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLKEQAFILGRMGNSKQALSVIIDVLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIFTDYRTETSLRHGCNDILKADCVNLLVKYYKEARHGVYLSNEDKPRAKRSNAHSFHVVEKSQSLSHVEAKSKTRGGGRCCICFDPFSIQNVSVIAFFCCHAYHSTCLMHSSDTNSSNEGIEVTSGEAETYDVYNNYVDDEETELSGPRMRCVLCTTAAS 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0728 1009 Coils Coil 70 98 - -
Dere07g0728 1009 SUPERFAMILY RING/U-box 928 966 - -
Dere07g0728 1009 Gene3D Tetratricopeptide repeat domain 607 878 IPR011990 GO:0005515
Dere07g0728 1009 Gene3D - 115 399 IPR015943 GO:0005515
Dere07g0728 1009 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 669 816 IPR000547 GO:0006886|GO:0016192
Dere07g0728 1009 SMART CLH_2 669 816 IPR000547 GO:0006886|GO:0016192
Dere07g0728 1009 MobiDBLite consensus disorder prediction 72 96 - -
Dere07g0728 1009 Pfam Region in Clathrin and VPS 670 812 IPR000547 GO:0006886|GO:0016192
Dere07g0728 1009 PIRSF Vps41 57 969 IPR016902 GO:0034058|GO:0046907
Dere07g0728 1009 SMART WD40_4 232 268 IPR001680 GO:0005515
Dere07g0728 1009 SMART WD40_4 144 183 IPR001680 GO:0005515
Dere07g0728 1009 FunFam Vacuolar protein sorting-associated protein 41 homolog 68 342 - -
Dere07g0728 1009 MobiDBLite consensus disorder prediction 45 101 - -
Dere07g0728 1009 PANTHER VACUOLAR PROTEIN SORTING VPS41 72 988 IPR045111 GO:0006623
Dere07g0728 1009 SUPERFAMILY WD40 repeat-like 116 318 IPR036322 GO:0005515
Dere07g0728 1009 FunFam Vacuolar protein sorting-associated protein 41 homolog 610 875 - -
Dere07g0728 1009 CDD RING-H2_Vps8 927 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0728 Dere-ChrDere07 10669006 10678191 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0728 07 10669006 10678191 Dere07g0728 07 10669006 10678191 ECH