Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0623 ATGGGAAGTGCCTCCAAGTTAGCTTCTGCTGCCATGAGAAGGCTTGAAGGTAAGATGGCTCTGGTCACTGGTGGCTCAAGTGGCATTGGCGAGTGCACCGCAAGACTCTTCTCCAAGCACGGAGCTAAAGTGGTAATCGCTGATATCCAAGACGACTTGGGCCACTCCGTTTGCAATGAGTTGAACGATTCATCTTCATCCTCCTCTGCTACCTACGTCCATTGCGACGTCACAAAGGAAAAGGACGTCGAAAACGCAGTAAACACAGCGGTTTCCAAGTACGGCAAGCTAGACATCATGTTCAACAACGCCGGTATTGTCGGCGTCAACAAAACCAGCATCCTCGAAAACGAGAAATCTGAGTTCGAGGAAGTGATTAACGTTAATTTAGTGGGTGCGTTCTTGGGGACCAAGCACGCATCGAGGGTGATGATGCCAGCACGCCGTGGCAGCATAATTACAACGGCCAGTGTGTGTGGCTGCGTCGGTGGGCTGGCGCCACATGCGTACACCAGCTCCAAACATGCGGTGGTGGGGCTGACGAAGAACACGGCGGTGGAGCTTGGAGCATATGGGATTCGGGTGAACTGTGTGTCGCCGTACGCGGTGGCCACACCTTTGGCTAAGAATTTCTTTAGGCTTGACGATGAGGGAATACATGGTGTTTATTCCAACCTCAAAGGGGCAATTCTTGAAGCAGAGGATGTGGCTGAGGCTGCTCTTTACTTGGCGAGTGACCAATCCAAGTATGTGAGTGGGCACAACCTTATCGTCGATGGAGGATTCACTATTACCAACCCAGCCTTTACTTTTTTTGGACAGTCTCCTTAG 831 0.5138 MGSASKLASAAMRRLEGKMALVTGGSSGIGECTARLFSKHGAKVVIADIQDDLGHSVCNELNDSSSSSSATYVHCDVTKEKDVENAVNTAVSKYGKLDIMFNNAGIVGVNKTSILENEKSEFEEVINVNLVGAFLGTKHASRVMMPARRGSIITTASVCGCVGGLAPHAYTSSKHAVVGLTKNTAVELGAYGIRVNCVSPYAVATPLAKNFFRLDDEGIHGVYSNLKGAILEAEDVAEAALYLASDQSKYVSGHNLIVDGGFTITNPAFTFFGQSP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0623 276 Gene3D - 4 273 - -
Dere07g0623 276 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 IPR002347 -
Dere07g0623 276 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Dere07g0623 276 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 IPR002347 -
Dere07g0623 276 FunFam Short-chain dehydrogenase reductase 6 268 - -
Dere07g0623 276 Pfam Enoyl-(Acyl carrier protein) reductase 26 263 - -
Dere07g0623 276 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 264 IPR036291 -
Dere07g0623 276 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 11 266 - -
Dere07g0623 276 PRINTS Glucose/ribitol dehydrogenase family signature 170 189 IPR002347 -
Dere07g0623 276 PRINTS Glucose/ribitol dehydrogenase family signature 191 208 IPR002347 -
Dere07g0623 276 PRINTS Glucose/ribitol dehydrogenase family signature 144 160 IPR002347 -
Dere07g0623 276 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Dere07g0623 276 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Dere07g0623 276 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Dere07g0623 276 CDD secoisolariciresinol-DH_like_SDR_c 14 263 IPR045309 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0623 Dere-ChrDere07 9358052 9359054 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0623 15 270 Acyl Lipid Metabolism Gene Families AT1G63380 34.831 4.60e-35 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0623 07 9358052 9359054 Dere07g0623 07 9358052 9359054 ECH