Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0409 ATGGCTGATCAAGAGAACAACAATATTGGTGATGTAGACGCGTCCGTTCGGGTGCTTGAGGATTGTTCGTTGGACGGGTCGGAGCGAAGTCCATTTGTGTCTTCTAGCTTTGGGAAGGTGGAGGAGAAAGCCGAGTGTGAAAATTTGGGGATTTCGAGTTGTTCTGTCGAGCAAGTAATGAAAAATGAGTCTGAGCCAATTGCTATGGAATCTGCTTGCGTCTTGAAGGTGGACGGAGAAGTGTGTGAAAATATGGGGGTTTCGGATTGTAACATTGAGGAAGGGATCGGAAGTTTTAGTTTAGTTAATGGGTTTGAAAGTTCTGTTACAATTAAAGAGAATGGGGGGAAGGGTGAGATACAGATGAATGAGGATGAGAGTGAAAGTTCAGAGTCTGAGAGTGATGATCCTTCTTCACCAGCATCTTCATCTTCTGGTAGTAGCAGTGATAGTGATTGTAGTTCAACTAGTGGTTCTAGTGATGACGATGACATTGAAGATAACAAGGAAGAGGGACAGCAGGAAAGAGAAGGAAAGACAGAAAATGTTGAAGTGGAAGTTGAAGAAGGTGAGATTAAAGATTCTGATGGACGAAAGCTGGTTACTGAAACCGCTGCTGTCAATTATGATGATGATGATGATGAGGAAGAAGATGATGATGTAGAGGTAGTTAGTTGGAGTGGCGTTAATGATGATGATGTTGATGTTGAAGAAGATGAAGATGAAACTGCTAGGGGAGGACCCATCAGGTCAAAGAATGAGCTCAAGAATCTTCCTCCAGTTCCTCCGGTCAATGTGACCTTAGAACCACACCATCAAATGCTGCCAGTGGGAATTGTTATGTCGATTATCAGTACCCAAGTCATTGTGGAAGGGGCAGAGAAGCATGATCCTCTTGATGAGGGATCTATTCTCTGGATGACTGAAAGCCGAACTCCGCTAGGGTTGGTTGATGAAATCTTTGGACCTGTCAAAAACCCCTATTATGTTGTGAGGTATAATTCTGAAAATGAAGTCCGCACAGGGGTCCATGTGGGCACTTCAGTCTCTTTTGTTCCCCAATTTGCCGATCATGTGCTTAATAACAAGGATCTTTACAAGAAAGGATATGATGCCTCTGGTTTGAATGATGAAGAGGTGTCAGACGCAGAGTTTTCGGATGATGAGAAGGAGGCTGAATACAGGAGAATGCAAAAAATGACGAAGCGAGGTATTAGTGATCAGAATCCTGGAAAACAAAAAAACAACAAAAAGAAAGCTCCAGAAAAAAGGGGCTCAGCAGTTCCTCCCTGCTCCGTTACACCTGCTGCTCCATTGCACGATCATCAAAATACTTCTCCTTTTACAGGCACTGGACAAGGTCCTTTTGGGGCAACTGTGATTGTTCCGCCATTTCCGCCCACAAGTGCTGTCCCTAATTTTGCTCCAAATGGAGTTTGGACAAATGGAGTACCACTTATGCAGCCACAGTCTGCTCTGCTTAATGGATTTCCTCCTAATGGTATACCTTGGTTCCCAGGAAATACACAAAATCCTTATCAGTTGCCCATGACAGGAATCCCGTTTCAACAGCAATTAGGTCCCAATCTGGGATCACTTCCGGCAACCGTGTTGCCTGGGGTACAACCCAATATATTTGCACAACCTATGCATCAGCAGGGGCTTCTTGGTCAAAATCAAATGACATTTGGGTTGAGCTCACACATTGCACAGATTCAGGCACCTGTAAGCGGTGGAGAACAAGGTATTTTATCCAATGATTTGCAATCAGGAAGAAGCCATAATTTGCATCCTAGTACTATTCCGGACAATCGCCATGCTTCCCGTCAATTTCAGCCTGGTGCCTCTGCTAATCGTGGAAGGAAAACGTTTCACCAAAGGGGAAGGATAGGTTGGCGACCACGCAAGTGA 1911 0.4448 MADQENNNIGDVDASVRVLEDCSLDGSERSPFVSSSFGKVEEKAECENLGISSCSVEQVMKNESEPIAMESACVLKVDGEVCENMGVSDCNIEEGIGSFSLVNGFESSVTIKENGGKGEIQMNEDESESSESESDDPSSPASSSSGSSSDSDCSSTSGSSDDDDIEDNKEEGQQEREGKTENVEVEVEEGEIKDSDGRKLVTETAAVNYDDDDDEEEDDDVEVVSWSGVNDDDVDVEEDEDETARGGPIRSKNELKNLPPVPPVNVTLEPHHQMLPVGIVMSIISTQVIVEGAEKHDPLDEGSILWMTESRTPLGLVDEIFGPVKNPYYVVRYNSENEVRTGVHVGTSVSFVPQFADHVLNNKDLYKKGYDASGLNDEEVSDAEFSDDEKEAEYRRMQKMTKRGISDQNPGKQKNNKKKAPEKRGSAVPPCSVTPAAPLHDHQNTSPFTGTGQGPFGATVIVPPFPPTSAVPNFAPNGVWTNGVPLMQPQSALLNGFPPNGIPWFPGNTQNPYQLPMTGIPFQQQLGPNLGSLPATVLPGVQPNIFAQPMHQQGLLGQNQMTFGLSSHIAQIQAPVSGGEQGILSNDLQSGRSHNLHPSTIPDNRHASRQFQPGASANRGRKTFHQRGRIGWRPRK 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0409 636 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 42 575 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Dere07g0409 636 MobiDBLite consensus disorder prediction 171 200 - -
Dere07g0409 636 Pfam Gar1/Naf1 RNA binding region 276 356 IPR007504 GO:0001522|GO:0042254
Dere07g0409 636 MobiDBLite consensus disorder prediction 580 619 - -
Dere07g0409 636 MobiDBLite consensus disorder prediction 134 156 - -
Dere07g0409 636 Gene3D Probable tRNA pseudouridine synthase domain 246 352 IPR038664 -
Dere07g0409 636 MobiDBLite consensus disorder prediction 438 453 - -
Dere07g0409 636 MobiDBLite consensus disorder prediction 388 402 - -
Dere07g0409 636 MobiDBLite consensus disorder prediction 580 636 - -
Dere07g0409 636 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 246 352 - -
Dere07g0409 636 MobiDBLite consensus disorder prediction 207 242 - -
Dere07g0409 636 MobiDBLite consensus disorder prediction 112 253 - -
Dere07g0409 636 MobiDBLite consensus disorder prediction 379 453 - -
Dere07g0409 636 MobiDBLite consensus disorder prediction 622 636 - -
Dere07g0409 636 SUPERFAMILY Translation proteins 274 346 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0409 Dere-ChrDere07 6976135 6979317 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0409 07 6976135 6979317 Dere07g0409 07 6976135 6979317 ECH