Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1501 ATGTCTCGAATATTCTCGAGATGGAAGAAGGTGAAGGAGATGGCGATGATTTCTTCTGCAGAGACTCAGTTCGCTGTTTCAGTGAGAAATGGCCATAACTGGATGAGGTTCAATTATCGATTCAACCAGGTTTGCCCAATCTCGACTCACTTGAATTATTTTCCCATCGCGACCCATAGACGACGTGAATCGTTCATCAGCGTTCAGGAGCGGTACAAGTGGGACCACGGTGGCTCCGGTGACACCCATAATCGGAATTCTCAGGCCCGGAAAATTCGAGCGGAGGCTAACTGCCCACGGTGCGCCATGCACATGGATGTAATATTCTCCAATCGTCATTTTCCCACTTCTCCTTCTGATTCCAAAATGTTCCCTCCGGTTCCTCTTTATGAAGAAGGGGTTTATCAAACTATGAATCTCTGCCCCAATTGTAAAACTGCTTATTACTTCCGCCCTTTTGACACTGCTCCTCTCCAAGGTACATTTGTGGAGATTGGTAGGGTCACAAATAATAATGTTAATAATAACACTAATAAATTGCAGAGGAGGATATCCCATAGCAAAGTCAAAGATGACAGAGAAAGTAATAATGGTCGTGGTGGTAACAGTGGAGCAGAAGATTATGCTCGTGGAAGTAACACCAATGATGGACTTAGAGTGTCATTCTGGGATACCTTGAAATCCTTTAGTGATGGAGATGGTGGAGAACCACCAGAAACTTGGTCTCCCCCGCCTGGTTCTTCTAATGGGAATGGGCTGGCTGTGCATACTCCTCCAGGCCCACCTTTTGCACCTGGTGTTAATGTTGTTCGGGCTTCAGGGCCACGGGAGGGTGGTTCAAGCGGTGGAGGTGGGGGTAATGGAGAAAAGACTACATGGGGAGGCTCCAATTTGGGTAAGGACTTACCCACACCAAAGGAGATCTGCAAGGGTCTTGATAAGTTTGTTATTGGCCAGGACAGAGCCAAAAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATACACCATGCCTCTTTACAGAAAGGGTCAGGGGCAGATACAGGAATTTCAAAACCTCTAGATGATGATGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCTACAGGTTCAGGGAAGACATTGCTTGCAAAAACTCTAGCTCGATTTGTAAATGTTCCATTTGTCATTGCTGATGCAACAACCTTAACTCAGGCTGGTTATGTTGGAGAAGATGTCGAATCTATATTGTATAAACTACTTGTGGCAGCTGAGTTCAATGTTCAAGCCGCTCAACAAGGGATAGTTTACATTGACGAAGTTGACAAGATAACAAAGAAGGCTGAGAGCTTAAATATTAGCCGGGATGTTTCTGGTGAGGGGGTTCAGCAGGCATTATTGAAAATGTTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGGGGGGATAACATACAGATTGACACAAAGGATATTCTTTTTATATGCGGTGGAGCATTCATTGATCTTGACAAGACAATATCAGAGAGACGGCAAGATTCTTCTATTGGTTTTGGAGCACCAGTTCGTGCAAATATGAGAACCAACAGAGTAATAAATGCTGCAGTAACATCATCACTACTTGAATCGGTGGAAAGTGCTGATCTGATTGCATATGGTCTCATACCTGAGTTTATTGGACGTTTTCCAATCTTAGTTAGTTTATCAGCCTTAACTGAAGATCAACTTGTGCAGGTCCTCACAGAACCGAAAAATGCTCTTGGTAAGCAGTACAAGAAACTAATTGGCATGAATAATGTAAAGCTTCACTTCACAAAGAAAGCGCTACGACTGATCGCAAAGAAAGCAATGGCCAAGAATACAGGTGCCAGGGGTTTAAGGGCCATACTGGAAAGCATTTTAACTGATGCCATGTTTGAGATTCCAGATGTTAAGAGCGGGAATGACCGGATCGATGCAGTTGTTGTCGATGAGGAGTCAGTAGGATCAGTTAATGCTCCTGGATGTGGAGGCAAAATTCTTCGTGGACATGGTGCTTGGGAGCGTTACCTTGCACAGACAAAGGATTCAGTGGCTAATGGTGAGGTAGCTGAATCAGATGTACAAGAGGGGGACTCGGAGCTTTCATCAAGAGCCATGGGCATGTGA 2163 0.4429 MSRIFSRWKKVKEMAMISSAETQFAVSVRNGHNWMRFNYRFNQVCPISTHLNYFPIATHRRRESFISVQERYKWDHGGSGDTHNRNSQARKIRAEANCPRCAMHMDVIFSNRHFPTSPSDSKMFPPVPLYEEGVYQTMNLCPNCKTAYYFRPFDTAPLQGTFVEIGRVTNNNVNNNTNKLQRRISHSKVKDDRESNNGRGGNSGAEDYARGSNTNDGLRVSFWDTLKSFSDGDGGEPPETWSPPPGSSNGNGLAVHTPPGPPFAPGVNVVRASGPREGGSSGGGGGNGEKTTWGGSNLGKDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIHHASLQKGSGADTGISKPLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLDKTISERRQDSSIGFGAPVRANMRTNRVINAAVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLVQVLTEPKNALGKQYKKLIGMNNVKLHFTKKALRLIAKKAMAKNTGARGLRAILESILTDAMFEIPDVKSGNDRIDAVVVDEESVGSVNAPGCGGKILRGHGAWERYLAQTKDSVANGEVAESDVQEGDSELSSRAMGM 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1501 720 CDD RecA-like_ClpX 303 573 - -
Dere06g1501 720 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 575 678 - -
Dere06g1501 720 Pfam AAA domain (Cdc48 subfamily) 365 569 IPR003959 GO:0005524|GO:0016887
Dere06g1501 720 SMART ClpB_D2_small_2 576 669 IPR019489 -
Dere06g1501 720 Gene3D - 575 675 - -
Dere06g1501 720 Pfam C-terminal, D2-small domain, of ClpB protein 576 646 IPR019489 -
Dere06g1501 720 MobiDBLite consensus disorder prediction 170 303 - -
Dere06g1501 720 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 93 694 - -
Dere06g1501 720 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 299 668 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Dere06g1501 720 MobiDBLite consensus disorder prediction 699 720 - -
Dere06g1501 720 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 296 574 - -
Dere06g1501 720 SMART AAA_5 365 527 IPR003593 GO:0016887
Dere06g1501 720 Gene3D - 296 574 IPR027417 -
Dere06g1501 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 662 IPR027417 -
Dere06g1501 720 MobiDBLite consensus disorder prediction 198 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1501 Dere-ChrDere06 28071582 28083163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1501 369 468 Miscellaneous Gene Families AT3G02450 36.634 7.41e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g1501 06 28071582 28083163 Dere06g1501 06 28071582 28083163 ECH