Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1474 ATGACTCTTCCTAGGCAGCAGCCACTGTCTATCCGTCAGAGGAGAACCCAACGTCCATCGAAGAAGAACCCAATGGCTAGTGTCTGTTCACCCAAGTTCACTGCAATGATGCTGACTAGTAGATTGCACACTCATAATGTTAGTTGGCAAATGGGAGGAATGGACTGTTGGATTCTTGGTGGAGGATTTCAGGCAACGGAGCATGAATATGGTGAGAGAAATGGCAAAGAGGAGCATACGGGAGGCAAGGGTCATGATGACTATGAGAAAGGTTTTAGAGGGGAAATGGTGATGACGAACAATGGCTACTACCTAGGAAAAGTCATTGCTGCAGGGATGATGGCTGCTATCATTTGTGCCAAAGCGGCCCGAAGAAAAACCCTAGTCCAGGGTTTAGCCTTCTTCAATTTTAAACTCGTGTCTGTCTCAGAATCACCATTTCCTTCTCCTCCACTTTTCTGTGGAGTTCGCATTAGCTCACTGTCCAAAATGAGCTTCGCTGCTTATAAGTTGATGCACAGCGCAACGGGCATCGAGAATTGCGCTTCTGGTTTCATCACGCATTCTCGTGCTGACTTCGTTCCCCGAATCCCTCCGATTCAGACCGATGACATTGACTCAGAGTGTCCGGCGAGGCGCGAAATTGGTCCTATTCCCGACCTCATTGTCACTGCGGCGAATGTTTTGGAAGTATACATTGTGAGGGTGCAAGAAGAAGGTAGCAGAGAGCCTAAGGGTTATGTAGAATCCAAGCGTGGGGGTCTCATGGATGGCCTTAGTGGGGCCTCGCTCGAGCTTGCTTGCCATTACAGGTTGCATGGTAATGTTGAAACTATGGCGGTGTTGAGCATTGGAGGTGTTGACGCTTCTAGGAGGAGAGATTCTATTATTTTAACTTTTAAAGACGCAAAAATTTCAGTTCTAGAATATGATGATTCTATTCATGGACTTAGAATAAGTTCTTTGCATTGTTTTGAGGGCCCAGACTGGCTTCATTTAAAAAGAGGCAGAGAACAATTTGCTAGAGGCCCATTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGCGGAGTTCTTGTCTATGATTTGCAAATGATTATACTTAAGGCTACTCAGGCTGGATCTGGTTTAGTTGGAGAGGATGATGCCTTGGTTTCTGGAGCTGCAATTGCTGCTCAGGTTGAGTCATCTTATATGATGAGTCTACGAGACTTGGATATGAGGCATGTAAAAGATTTTACATTTGTGCATGGCTATATTGAACCTGTGATGGTGATACTGCATGAAAAAGAGCTTACTTGGGCTGGGCGTGTCTCTTGGAAGCACCATACTTGCATGCTATCTGCACTGAGTATCAGCACAACTTTGAAGCAGCATCCACTAATATGGTCGGCTGTTAATCTTCCCCATGATGCTTACAAGCTTCTTGCAGTGCCATCACCAATAGGTGGTGTTCTTGTGTTTGGTGCTAATACTATTCATTATCATAGTCAGTCTGCTTCATGTGCATTGGCGTTGAATAGTTATGCTGTTTCACTTGATAGTAGTCAAGAGATGCCTAGATCAGGTTTTAATGTGGAGCTTGATGCTGCCCATGCAACTTGGTTGATGAATGATGTGGCCTTGCTGTCAACAAAAACTGGTGAACTGCTGTTGCTTACTCTTGTTTATGATGGAAGGGTTGTGCAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTTTGTCATCTGGTATTACGACAGTTGGAAATTCTCTGTTTTTTCTCGCCAGCCGATTAGGAGACAGTGTGCTGGTTCAATTTTCCTGTGGATCAGGAATTTCAATGCTGTCATCCAATCTAAAGGAAGAGGTTGGTGATATAGAAGGTGATGCTCCTTCAGCAAAGCGACTGCGCAGGTCATCTTCTGATGCTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCCTGTTTGGATCTACTCCAAATAGAACTGAATCAGCACAGAAATCCTTCTCATTTGCAGTGAGGGATTCGTTAATTAATGTTGGTCCTTTGAAAGACTTCTCATATGGTCTAAGGATAAATGCTGATGCCAATGCAACTGGAATTGCTAAGCAAAGTAACTATGAACTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTCTCTGCGTTCTTCGGCAATCAGTTCGCCCTGAAGTGATAACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTTTATCATAAGAGCACACGCTCTCATAATGCTGATTCTTCTAAGCTGGCTGATGATGATGATGAGTATCATGCATATCTCATCATAAGCTTGGAGGCTCGTACTATGGTACTGGAAACAGCTGATCTTCTCAGTGAGGTTACTGAAAGTGTGGACTATTACGTTCAAGGAAAAACAATTGCTGCTGGAAACTTATTTGGAAGGCGTCGAGTAATTCAAGTCTATGAACGTGGTGCTCGCATTTTAGATGGCTCTTTTATGACCCAAGATGTAAGCTTTGGAGCTTCAAACTCTGAATCTAGTTCTGGATCTGAGAGTGCTATTGTGCTGTCTGTCTCTATAGCTGATCCATATGTATTACTCAGAATGAGCGATGGAAGTATTCGACTTTTGGTTGGAGATCCTACTACCTGCACTGTTTCTGTCACTACTCCACCTTCATTTGAAAGCTCAAAAAAGTCGGTATCTTCCTGTACACTTTACCACGATAAAGGACCTGAGCCATGGCTGCGGAAGACAAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCAATTGATGGCACTGATGGTGCAGCTCAAGATCATGGAGATATTTATTGTGTTGTTTGTTATGAAAATGGTGCCCTAGAAATATTTGACGTGCCCACTTTCAGCTGTGTTTTTTCTGTGGAAAAATTTATGTCTGGAAAGAGCCACCTTGTTGATACTCTCATAAAGGAGGCATCAAAAGATTCTCAGAAAGTTGATGGAGGCTCTGAAGAAGGGACTAACCAAGGCAGGAAGGAAAATGTACAGAATATGAAGGTTGTAGAATTGGCCATGCAGAAATGGTCAGGGCAGTATAGTAGCCCATTTCTTTTTGGGATTTTGAGTGATGGAACATTTCTTTGTTACCATGCTTACCTTTATGAAAGCTCAGATGGTACTTCCAAAGTTGAAGATTTAGCATCTGCACAAGGACCTGTGGGCCTTAACAGCACTAGTGCTTCTAGGCTTAGAAATTTGAGATTTGTTCGTGTCCCCTTAGATGTATATGCCAGAGAGGAGATATCAAGTGGATCCCCTTGTCAGAGAATTACAATTTTCAAGAACATCAGTGGTTATCAAGGATTTTTCCTATCAGGCTCTAGACCTGCTTGGGTTATGGTGTTGAGAGAACGGCTTCGTGTTCATCCACAGCTATGTGATGGGTCTATTGTTGCTTTTACTGTCCTTCACAATGTGAACTGCAATCATGGTCTCATATATGTTACTTCACAGGGTGTTTTAAAGATCTGTCAGTTGCCTTCTGGCTCAAGCTATGATAACTACTGGCCTGTACAGAAAATTCCATTAAAAGCCACTCCTCATCAAGTAACCTACTTTGCAGAGAAGAATTTGTATCCACTTATCGTCTCAGTTCCTGTTCTTAAGCCCCTAAATCAAGTTGTTTCATCCTTGGGTGATCAAGAGGTCAACCAACAGACTGAGAATCAAAATTTGACCTCTGATGAGCAAAACCGCTTTTATACTATTGATGAATTTGAGGTTCGTATTATGGAGCCTGAAAAATCTGGTGGCCCTTGGCAAACAAAGGCAACAATACCTATGCAAAGTTCAGAACATGCCCTTACTGTGAGAATGGTTACTCTGTTGAATACAGACACAAAAGAAAATGAAACGCTTTTAGCTATTGGCACTGCTTATGTGCAAGGAGAGGATGTCGCTGCAAGAGGGCGTGTTCTACTGTTTTCTTTGGGAAAAAATACTGATAATAGTCAACCTCTGGTGTCAGAGGTCTACTCAAAAGAACTGAAAGGTGCTATATCTGCTTTGGCTTCACTTCAAGGCCATCTATTAATAGCTTCTGGTCCAAAAATTATTCTGCACAAGTGGGCTGGTACTGAGTTGAATGGTATTGCATTTTTTGATGCTCCACCATTACATGTTGTGAGCTTAAACATTGTTAAAAATTTTATACTTATTGGTGACATCCATAAAAGCATATACTTTCTTAGTTGGAAGGAACAGGGTGCTCAACTTAGCTTATTAGCCAAGGACTTTGGATCTCTTGATTGTTTTGCGACTGAGTTTTTGATTGATGGAAGCACTTTGAGTCTCATGGTTTCTGATGATCAAAAGAACATCCAGATTTTTTACTATGCACCGAAGATGTCTGAGAGCTGGAAGGGTCAAAAGCTTCTTTCAAGGGCTGAATTTCATGTTGGTGCCCACGTGACTAAATTCTTGCGTTTGCAGATGCTGTCCACCACCTCTTCTGATAGGACTGGTTCTGGTCCAGGCTCAGATAAAACCAATCGTTTTGCTTTATTATTTGGTACCCTGGATGGCAGTATTGGTTGCATTGCACCTCTTGACGAAATCACATTTCGTAGGCTCCAATCTTTGCAGAGAAAGCTTGTTGATGCTGTACCTCATGTTGCTGGCTTAAATCCAAGAGCTTTTAGACAGTTCCGTTCAAATGGAAAGGCTCATCGGCCTGGCCCTGACAGTATAGTTGACTGTGAACTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCACCAGGTTGGAACAACCCGATCGCAAATTCTTTCAAATCTAACTGACCTGTCTCTTGGAACAAGCTTCTTGTGA 4863 0.4285 MTLPRQQPLSIRQRRTQRPSKKNPMASVCSPKFTAMMLTSRLHTHNVSWQMGGMDCWILGGGFQATEHEYGERNGKEEHTGGKGHDDYEKGFRGEMVMTNNGYYLGKVIAAGMMAAIICAKAARRKTLVQGLAFFNFKLVSVSESPFPSPPLFCGVRISSLSKMSFAAYKLMHSATGIENCASGFITHSRADFVPRIPPIQTDDIDSECPARREIGPIPDLIVTAANVLEVYIVRVQEEGSREPKGYVESKRGGLMDGLSGASLELACHYRLHGNVETMAVLSIGGVDASRRRDSIILTFKDAKISVLEYDDSIHGLRISSLHCFEGPDWLHLKRGREQFARGPLVKVDPQGRCGGVLVYDLQMIILKATQAGSGLVGEDDALVSGAAIAAQVESSYMMSLRDLDMRHVKDFTFVHGYIEPVMVILHEKELTWAGRVSWKHHTCMLSALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVFGANTIHYHSQSASCALALNSYAVSLDSSQEMPRSGFNVELDAAHATWLMNDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGITTVGNSLFFLASRLGDSVLVQFSCGSGISMLSSNLKEEVGDIEGDAPSAKRLRRSSSDALQDMVSGEELSLFGSTPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSVRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKLADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTIAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESSSGSESAIVLSVSIADPYVLLRMSDGSIRLLVGDPTTCTVSVTTPPSFESSKKSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCYENGALEIFDVPTFSCVFSVEKFMSGKSHLVDTLIKEASKDSQKVDGGSEEGTNQGRKENVQNMKVVELAMQKWSGQYSSPFLFGILSDGTFLCYHAYLYESSDGTSKVEDLASAQGPVGLNSTSASRLRNLRFVRVPLDVYAREEISSGSPCQRITIFKNISGYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSSYDNYWPVQKIPLKATPHQVTYFAEKNLYPLIVSVPVLKPLNQVVSSLGDQEVNQQTENQNLTSDEQNRFYTIDEFEVRIMEPEKSGGPWQTKATIPMQSSEHALTVRMVTLLNTDTKENETLLAIGTAYVQGEDVAARGRVLLFSLGKNTDNSQPLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWAGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTTSSDRTGSGPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPRAFRQFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQVGTTRSQILSNLTDLSLGTSFL 1620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1474 1620 MobiDBLite consensus disorder prediction 1 26 - -
Dere06g1474 1620 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 294 857 IPR018846 -
Dere06g1474 1620 FunFam Cleavage and polyadenylation specificity factor subunit 1 216 609 - -
Dere06g1474 1620 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 172 1606 - -
Dere06g1474 1620 Pfam CPSF A subunit region 1251 1585 IPR004871 GO:0003676|GO:0005634
Dere06g1474 1620 Gene3D - 218 611 IPR015943 GO:0005515
Dere06g1474 1620 Gene3D - 1139 1527 IPR015943 GO:0005515
Dere06g1474 1620 MobiDBLite consensus disorder prediction 1 24 - -
Dere06g1474 1620 FunFam cleavage and polyadenylation specificity factor subunit 1 1139 1527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1474 Dere-ChrDere06 27684253 27709672 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g1474 06 27684253 27709672 Dere06g1474 06 27684253 27709672 ECH