Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0201 ATGGCTTCTTCTTGTGTGACAACCAATACCCATTTACCAAACGCAAGAAAGAGCGATTTCTTTCGTCAGGATAATGGGTTTTTAGGAGAAAGAATCAAGACCCAGAACAGTGGTAGTCCCTACGCAAATCAGTTGACTTCAAGTATGAGAAACGAGAAGAGGGTCAAGAAGGTCAAAACTGGCGTTGTTTCTGCTGTTCTTACATCAAATAATACCAAAGAAGCTCTGACCTTGCAGATGCCTTCGTTTCTGAGACGAAAGGCTGACCCCAAAAACGTAATTTCCATCATATTGGGAGGAGGACCTGGTTTTCAACTCTTTCCCCTTACCAAACGAGCTGCAACACCTGCTGTTCCTGTTGGTGGATGCTACAGACTCATTGACATCCCAATGAGTAACTGTATTAACAGTGGCATCAACAAAATATTTGTACTTACCCAATTCAATTCTGCATCCCTGAACCGTCATATCTCACGCACCTACTTTGGAAACGGTGTCAACTTTGGGGATGGATTTGTGGAGGTTCTGGCGGCTACTCAAACACCAGGAGAAGCAGGGAAGAAGTGGTTCCAAGGGACTGCAGATGCTGTGAGACAATTTACTTGGGTATTTGAGGATGCCAAGAACACAAACGTTGAGAATGTATTGATCTTGGCAGGAGATCATCTATATAGAATGGATTACATGGACCTTGTGCAGAGTCATGTTGACAGAAATGCTGATATTACAATTTCATGCGCAGCAGTGGATGACAGCCGCGCCACCGATTATGGATTGGTCAAGGTAGATAGCGGAGGCCGCATCACCCAATTTTCAGAGAAACCAAAGGGTGCTGATTTGAAAGCAATGCAAGTTGATACCTCTTTTATTGGGTTGTCACACCAAGATGCATCAAAGTCACCATATATTGCATCCATGGGGGTTTACGTATTTAAGACAGATGTTTTGCTCAAGCTTCTGAAATGGAGATATCCTACATCCAATGACTTTGGATCTGAAATCATTCCTGCTGCTGTGAGGGAACACGACGTTCAAGCATTCTTTTTCAGAGACTACTGGGAAGACATTGGAACAATAAAGTCCTTTTATCATGCTAACCTTGCTCTTACTGAAGAGAGTCCAAAGTTTGAATTTTATGACCCTAAAACACCTATTTTCACATCTCCTCGTTTCCTGCCACCAACAAAGATTGACAAATGTCGGATTGTGGATGCAATTATCTCCCATGGATGTTTCCTGCGAGAATGTACAGTCCAGCATTCAATTGTGGGGGAACGTTCACGTTTGGATTATGGTGTTGAGCTCCAGGACACTGTGATGATGGGAGCAGACTATTACCAAACAGAATCTGAAATTGCTTCTCTGCTAGCAGAAGGGAAGGTCCCCATTGGGATTGGAAGGAATACCAAAATCAGGAACTGTATAATTGACAAGAACGCAAAGATCGGGAAGGATGTCATCATCATGAACAAAGATGGTGTTCAAGAAGCAGATAGACCAGAAGATGGATTTTACATTCGATCAGGAATCACCATCATCTTGGAGAAGGCAACAATAGAGGATGGCACTGTCATATGA 1578 0.4303 MASSCVTTNTHLPNARKSDFFRQDNGFLGERIKTQNSGSPYANQLTSSMRNEKRVKKVKTGVVSAVLTSNNTKEALTLQMPSFLRRKADPKNVISIILGGGPGFQLFPLTKRAATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHISRTYFGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQSHVDRNADITISCAAVDDSRATDYGLVKVDSGGRITQFSEKPKGADLKAMQVDTSFIGLSHQDASKSPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPAAVREHDVQAFFFRDYWEDIGTIKSFYHANLALTEESPKFEFYDPKTPIFTSPRFLPPTKIDKCRIVDAIISHGCFLRECTVQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIMNKDGVQEADRPEDGFYIRSGITIILEKATIEDGTVI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0201 525 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 79 390 IPR029044 -
Dere06g0201 525 FunFam Glucose-1-phosphate adenylyltransferase 75 390 - -
Dere06g0201 525 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 43 525 IPR011831 GO:0005978|GO:0008878
Dere06g0201 525 Gene3D Hexapeptide repeat proteins 391 525 - -
Dere06g0201 525 CDD ADP_Glucose_PP 96 356 - -
Dere06g0201 525 CDD LbH_G1P_AT_C 393 519 - -
Dere06g0201 525 NCBIfam glucose-1-phosphate adenylyltransferase 93 489 IPR011831 GO:0005978|GO:0008878
Dere06g0201 525 Pfam Nucleotidyl transferase 95 371 IPR005835 GO:0009058
Dere06g0201 525 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 304 314 IPR005836 GO:0005978|GO:0008878
Dere06g0201 525 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 189 197 IPR005836 GO:0005978|GO:0008878
Dere06g0201 525 FunFam Glucose-1-phosphate adenylyltransferase 391 525 - -
Dere06g0201 525 SUPERFAMILY Nucleotide-diphospho-sugar transferases 91 486 IPR029044 -
Dere06g0201 525 SUPERFAMILY Trimeric LpxA-like enzymes 387 525 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0201 Dere-ChrDere06 2828801 2833391 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g0201 06 2828801 2833391 Dere06g0201 06 2828801 2833391 ECH