Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0155 ATGGCGAGCTTATTGGGAACGATTCTGAAGCACCCAGAAGAAATCTATCCAATGTTGAAGTTGAAGATGGTGATAAGGAATGCAGAGAAGGAGATTCCAGATCAGCAACCACACTGGGCTTTCTGCTACGCCATTCTTCACAAGGTTGCTCGAAGTTTTGCCCTCACCATTAAGAACCTTGATTCCCAGCTTCGCGATTCTATTCTCATATTTTATTTGGTTCTAAGAGCGTTGGACACAGTTGAGGATGATACAAGTTTGCCTACAAAAGTGAGAATACCTATTTTGCAGGCTTTTTATAGCCACATAGATGATCCACGCTGGAGTTTTTCCTGTGGTACCGAAGACTGTAAGATTCTTATGGAGCAGTTTCATCATGTTCGAACTGCCTTTCTTGAGCTCGAAAGAAGTCATCAGGATGTGATTAGAGAAGTTACCAAAAAGATGGGAGCTGGAATGGCAAAATTTATCTGCAAGGAGATAGAAACAATAGAAGATCTGAATGAGTATGCACATTACGTAGCAGGGCTTGTAGGCTTAGGACTTTCTAAGCTTTTTTATGCTTCTGGGTTAGAGGATTTAGCTCCTGAATCTCTCTCTAATTCCATGGGTCTACTTCTTCAGAATGCAAATATCATTCGAGATTATTTGGAAGATATTAATGAGATACCAATGCCTCGCACGTTCTGGCCTCGTCAAGTTTGGAGTAAATACGTGCACAAACTTGAGGACCTGAAAGATGAGAAGAATTCAGAGAAAGCATTGCAATGTTTGAATGAAATGGTCACAAATGCTTTGGTCCACGTAGAGCACTGCCTCAAATACATGTCTGCTTTGAGAGATCCAGCTATTTTCAGATTTTGTGCTGTTCCACAGGTCATAGCAATTGGAACCCTAGCTTTGTGCTATAACAACATTGACGTTTTCAGAGTTGCTTTGAAATTGAGGCGTGGTCTCACTGCTAAACTCATCCACCAAACAAGAACAATGTCTGATGTATATGCTGCCTTTTTTAAGTTCACTTCCCTCATGAAAGCTAAGGTTGAGAAGGATGATCCAAATGCCTCAACTACACTGAGCAGAATAGAGGCAATCCAAAAAATTTGCAAGGAGAATTCAGTAACTTCAAATAAACAACAAAGAGAATATTATACAGTTAACAAAGAGCTAGGATATCATTCACCTCAAGGAGTTGCTATCTATGTAGCCCTATGCTTGGCATTTGCATATTTGTATTCCAGCGTGCTCAATATACATTGCCCATTTGAAGCCCATTCTGTATCAAACTGGGCCTGA 1296 0.4051 MASLLGTILKHPEEIYPMLKLKMVIRNAEKEIPDQQPHWAFCYAILHKVARSFALTIKNLDSQLRDSILIFYLVLRALDTVEDDTSLPTKVRIPILQAFYSHIDDPRWSFSCGTEDCKILMEQFHHVRTAFLELERSHQDVIREVTKKMGAGMAKFICKEIETIEDLNEYAHYVAGLVGLGLSKLFYASGLEDLAPESLSNSMGLLLQNANIIRDYLEDINEIPMPRTFWPRQVWSKYVHKLEDLKDEKNSEKALQCLNEMVTNALVHVEHCLKYMSALRDPAIFRFCAVPQVIAIGTLALCYNNIDVFRVALKLRRGLTAKLIHQTRTMSDVYAAFFKFTSLMKAKVEKDDPNASTTLSRIEAIQKICKENSVTSNKQQREYYTVNKELGYHSPQGVAIYVALCLAFAYLYSSVLNIHCPFEAHSVSNWA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0155 431 FunFam Squalene synthase 1 36 372 - -
Dere06g0155 431 Pfam Squalene/phytoene synthase 47 311 IPR002060 GO:0009058
Dere06g0155 431 CDD Trans_IPPS_HH 40 322 IPR033904 GO:0004311
Dere06g0155 431 NCBIfam squalene synthase 38 369 IPR006449 GO:0004310|GO:0008610
Dere06g0155 431 SUPERFAMILY Terpenoid synthases 38 369 IPR008949 -
Dere06g0155 431 ProSitePatterns Squalene and phytoene synthases signature 1. 170 185 IPR019845 GO:0016765
Dere06g0155 431 SFLD Isoprenoid Synthase Type I 37 327 - -
Dere06g0155 431 SFLD Squalene/Phytoene Synthase Like 37 327 IPR002060 GO:0009058
Dere06g0155 431 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 5 410 IPR044844 GO:0004311
Dere06g0155 431 Gene3D Farnesyl Diphosphate Synthase 36 373 IPR008949 -
Dere06g0155 431 ProSitePatterns Squalene and phytoene synthases signature 2. 203 231 IPR019845 GO:0016765
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0155 Dere-ChrDere06 2039782 2045616 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g0155 06 2039782 2045616 Dere06g0155 06 2039782 2045616 ECH