Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0130 ATGCGTGAAGGACACGTAGGTGAAGTAGATGAGAGTGGTGAGGCCCACTTTGACCCAAATTGGTGGGGATACGGCCCAATACAGCCACACACAAAGCAAAAACTCTCAGACTGTCACTTTAGCTCGTGGGCAATTCACGAGACCAGCGAGCCAAAGAGGCCAGAAAGCTCACAGGAATCACAAGAAAAAGCAAAAATCTCTCAAATTTGCAGCTATTATTATATCTTACAGAGAATGGAGAGTACTGATTCAGGCACACCAAAGAAGAAAAGTGGTGGACATGGACAGGTTCTGGACGGTTCGAATATTATGGAGTTAGTTGGAAACGACCAAGTTTTCAGCAATTTCGTGGACCATAAGTTTCAGGAGCTGGATAGGGACAGAGACGGGAAGCTCTCCGTGAAGGAGCTTGAGCCTGCCGTTGCTGATATTGGTGCCGCACTGGGGTTGCCCGCTCAGGGTACTAATCCTGATTCCGATCACATCTATTCTGAGGTCTTGAATGAATTCACCCATGGCAAACAAGAGAAAGTGAACAAGACTGAGTTCAAAGAGGTACTCTCAGACATTTTGTTGGGCATGGCTGCCGGGCTGAAGCGAGACCCAATCGTGATACTTCGCATAGACGGGGAAGATCTCCTTGAGTTTGTTAATGGACCAAGTTATGAACCAGAAATGGCATCCATATTCTTCCAGATTGAGTCTCCTGATGCTTCACTCCGTGAGCATATAATTGGAGCTCTGGGAAAACTCACTGTTGATCAAGGAATTCCTCCTACATCAGATTCTTGGGTTTTTAATAACATTGTGCAACCGGCTCTGCAATCTCAAGCTGGCCCGGATTGGGATAAGCCTGTTTCCCAAGAGACATTTTTGGTGGAATTTAAGAAAGTGGCATCGAGTGTGGCTGATCGTCTGAAGGAGCAACCTGTCATTGTTGCTCACAGTGAAAACACCTTTGATGGAAGCGGTGTTAAGAGACTATTGTCCAACAAGTTTGAATTAGACAAGACATTGAACTCAGCTTTAGAAAATATACCAAAAGATCGCAATGGAAAACTGTCAAAGGAGTATCTGCGGGTGGCATTAGATGTGGTGTCCCCATCTGCCGGTTTGCCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTTATTGGTGAAGTCTTCAAGATGATAAATGCGGATGATGGAAAGATGGTTAAAGAAGACGAATTCAAGAAAATACTAACTGAAATTCTGGGAAGTATCATGTTGCAGTTAGAGGGCAATCCCATAACTGTTTCTTCAAATTCAGTTGTGCATGAGCCTTTAGGTTCTTCTTCTTCCCTCTTGCAGCCACCTTCTAGTGAAACTGAAACGGCATAG 1365 0.4476 MREGHVGEVDESGEAHFDPNWWGYGPIQPHTKQKLSDCHFSSWAIHETSEPKRPESSQESQEKAKISQICSYYYILQRMESTDSGTPKKKSGGHGQVLDGSNIMELVGNDQVFSNFVDHKFQELDRDRDGKLSVKELEPAVADIGAALGLPAQGTNPDSDHIYSEVLNEFTHGKQEKVNKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGPSYEPEMASIFFQIESPDASLREHIIGALGKLTVDQGIPPTSDSWVFNNIVQPALQSQAGPDWDKPVSQETFLVEFKKVASSVADRLKEQPVIVAHSENTFDGSGVKRLLSNKFELDKTLNSALENIPKDRNGKLSKEYLRVALDVVSPSAGLPPVGAIEEMDKVIGEVFKMINADDGKMVKEDEFKKILTEILGSIMLQLEGNPITVSSNSVVHEPLGSSSSLLQPPSSETETA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0130 454 Gene3D - 35 198 - -
Dere06g0130 454 SMART efh_1 338 366 IPR002048 GO:0005509
Dere06g0130 454 SMART efh_1 116 144 IPR002048 GO:0005509
Dere06g0130 454 SMART efh_1 384 412 IPR002048 GO:0005509
Dere06g0130 454 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Dere06g0130 454 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 208 432 - -
Dere06g0130 454 SUPERFAMILY EF-hand 120 423 IPR011992 -
Dere06g0130 454 MobiDBLite consensus disorder prediction 434 454 - -
Dere06g0130 454 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0130 Dere-ChrDere06 1520523 1526253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0130 90 453 EF-hand Containing Proteins AT4G38810 68.108 3.76e-176 496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g0130 06 1520523 1526253 Dere06g0130 06 1520523 1526253 ECH