Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0101 ATGGAAAATCCCTTAGCCTGGTGCTGCTTCACCCTCGTCCTTCTCTCCTCTCTTCTTCTTCATCACATTCCCTTAGGTGTTCTGGGTACCACATTCACATTCGTAAACAAATGCGACTACACCGTCTGGCCCGGAGTTCTCGCTAATGCCGGCAGCGGAAGTCTCGACAGTACCGGATTCGAGCTTCCCAAAGGCACTTCCCGCTCTTTCCTAGCTCCGACCGGCTGGTCCGGCCGTTTCTGGGGTCGAACGGGTTGCAACTTCGACGGATCCGATTCCGGATCAGGGTCATGTGCCACCGGCGACTGTGGCTCAGGGCAGCTCGAATGCAAAGGAGCCGGAGCATCGCCGCCGGTAACTCTCGCCGAGTTCACGCTTAGTAGCGCGGGAGGGCAAGATTTTTACGACGTTAGTCTCGTGGATGGGTACAATGTTCCCATTATCGTGGAAGGGACGGGCAGGTCGGGTCAATGCACTTCGACCGGGTGTGTTTCGGATCTGAACCAGAAATGCCCGGAGGAGCTCAGAGTGGGGGACGGCGACGCGTGCAGGAGCGCGTGTGAGGCTTTTAGCAACCCGGAGTATTGTTGCAGCGGCGCGTATAGTTCGCCGGCGACCTGTAGGCCGTCAGTGTACTCGGAAATGTTTAAGGCAGCTTGCCCGAGATCGTATAGCTACGCCTACGACGACGCTACGAGTACTTTTACTTGTGTGGGTGCTGATTATACGGTGACGTTTTGTCCATCCTCTCCAAGTCAGAAATCCTCACAAGATTCTATTCCCATAACCTCATCAACACCATCAACACCAACCACAACACAAGGATCTGGATTTGAAGGCACAACTACAGGGGTAGCTATGGGCTCAGGGTTGGGCTCGAGCTCGGGTACGGATACGGGTATCGAGTACTCGGATACGGGTTCAGGGTCAAGTGCAGCATCAGAAGAGGCCTTGCTAGCAGATAGCGCATATGTAGCTGGTTTGGCCATGGGAGCCTCATCCACCATCTCTTCATCTCCTCTACAATCTGCATTAGTGTTCACTTCTAGCTTTTTGCTTTGCCTCTCCCTCCTTTAG 1077 0.5432 MENPLAWCCFTLVLLSSLLLHHIPLGVLGTTFTFVNKCDYTVWPGVLANAGSGSLDSTGFELPKGTSRSFLAPTGWSGRFWGRTGCNFDGSDSGSGSCATGDCGSGQLECKGAGASPPVTLAEFTLSSAGGQDFYDVSLVDGYNVPIIVEGTGRSGQCTSTGCVSDLNQKCPEELRVGDGDACRSACEAFSNPEYCCSGAYSSPATCRPSVYSEMFKAACPRSYSYAYDDATSTFTCVGADYTVTFCPSSPSQKSSQDSIPITSSTPSTPTTTQGSGFEGTTTGVAMGSGLGSSSGTDTGIEYSDTGSGSSAASEEALLADSAYVAGLAMGASSTISSSPLQSALVFTSSFLLCLSLL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0101 358 MobiDBLite consensus disorder prediction 250 281 - -
Dere06g0101 358 FunFam THAUMATIN-LIKE PROTEIN 1 30 248 - -
Dere06g0101 358 PANTHER OS03G0233200 PROTEIN 16 248 IPR001938 -
Dere06g0101 358 SUPERFAMILY Osmotin, thaumatin-like protein 30 249 IPR037176 -
Dere06g0101 358 SMART tha2 32 248 IPR001938 -
Dere06g0101 358 CDD TLP-PA 31 247 - -
Dere06g0101 358 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Dere06g0101 358 PRINTS Pathogenesis-related protein signature 79 90 IPR001938 -
Dere06g0101 358 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Dere06g0101 358 PRINTS Pathogenesis-related protein signature 133 149 IPR001938 -
Dere06g0101 358 MobiDBLite consensus disorder prediction 289 308 - -
Dere06g0101 358 ProSitePatterns Thaumatin family signature. 94 110 IPR017949 -
Dere06g0101 358 Pfam Thaumatin family 36 248 IPR001938 -
Dere06g0101 358 Gene3D Thaumatin 30 248 IPR037176 -
Dere06g0101 358 ProSiteProfiles Thaumatin family profile. 29 248 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0101 Dere-ChrDere06 1121325 1123646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0101 10 257 Receptor kinase-like Gene Family AT5G38280 50.000 1.56e-79 254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g0101 06 1121325 1123646 Dere06g0101 06 1121325 1123646 ECH