Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0086 ATGCTTGAAAGCTGCTCTTGCCTTTACAGTTGTGTTTGTGGCAACTGGCAACTTGGTCCCCTGCAGCAATTGAGTTTAAGTCCTGTGGGAGAAGATATGTTCCATTGGCAAGCAACCATCATTGGTCCTAATGACAGTCCCTATGCTGGAGGCGTTTTCCTTGTTACTATCCATTTTCTTCCTGATTATCCTTTTAAGCCTCCCAAGGTTGCATTCAGGACCAAGGTATTCCATCCCAACATAAACAGTGCTGGAAATATTTGTCTGGACATACTCAAAGAACAATGGAGCCCTGCTCTCACCATATCCAAGGTTTTGCTGTCGATTTGTTCACTGCTAACGGATCCGAACCCGGATGACCCACTTGTGCCAGAAATTGCTCATATGTACAAGTCAGACAAAGTGAAGTATGAGTCACTGCTAGAAGCTGGACCCAGAAAAAACAACGTCTTTCATCTCTTCTGGTATGCATCTCTGCTGCGTCTTTGCTGGTTGTCTCGGGCTTCCTCTGTCCTGCGCCTTGAAGCTCCAGAGTTGCTGGGTTTAGGATCTACAAACCATATACAGCACTACAGGAAGGAAAAGAGACCATGA 594 0.4579 MLESCSCLYSCVCGNWQLGPLQQLSLSPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFLPDYPFKPPKVAFRTKVFHPNINSAGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYESLLEAGPRKNNVFHLFWYASLLRLCWLSRASSVLRLEAPELLGLGSTNHIQHYRKEKRP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0086 197 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 150 IPR000608 -
Dere06g0086 197 CDD UBCc 25 140 IPR000608 -
Dere06g0086 197 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 32 138 - -
Dere06g0086 197 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Dere06g0086 197 Pfam Ubiquitin-conjugating enzyme 20 141 IPR000608 -
Dere06g0086 197 Gene3D Ubiquitin Conjugating Enzyme 13 149 IPR016135 -
Dere06g0086 197 SUPERFAMILY UBC-like 16 141 IPR016135 -
Dere06g0086 197 SMART ubc_7 15 150 - -
Dere06g0086 197 FunFam Ubiquitin-conjugating enzyme E2 D3 15 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0086 Dere-ChrDere06 961200 965535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0086 9 118 Miscellaneous Gene Families AT1G17280 29.565 7.95e-12 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g0086 06 961200 965535 Dere06g0086 06 961200 965535 ECH