Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2601 ATGTCAGGTATGGAGAGGCTTCAAAGGATGTTTGCCGGTGCAGGAGGCGCATTGGGGCATCCGCCCCCTGATTCACCCACCCTTGATTCCGCTGAGCAGGTTTATATTTCGTCGTTAGCCCTTCTCAAAATGCTTAAACACGGAAGGGCCGGTGTTCCCATGGAAGTGATGGGCTTGATGTTGGGAGAGTTTGTAGACGAGTATACTGTCCGCGTTGTTGATGTCTTTGCGATGCCACAGAGTGGTACTGGTGTTAGTGTTGAGGCCGTGGATCATGTTTTTCAGACTAACATGCTCGATATGCTGAAGCAGACTGGAAGACCCGAGATGGTTGTAGGGTGGTATCATTCACATCCTGGATTTGGCTGTTGGCTTTCTGGAGTGGACATTAATACACAACAGAGTTTTGAGGCTTTAAATCAACGTGCTGTTGCTGTGGTGGTTGATCCTATTCAGAGTGTTAAAGGCAAGGTAGTGATTGATGCTTTTCGGCTGATTAATCCACAAACTATGATGCTGGGTCAGGAACCGCGGCAAACAACGTCTAACCTTGGTCATCTTAATAAGCCATCTATACAAGCTTTGATCCATGGCTTGAACCGACATTATTATTCCATAGCCATCAATTACAGGAAGAATGAACTTGAAGAGAAGATGTTACTTAACCTTCACAAGAAGAAATGGACTGATGGTTTGACACTTAGGCGTTTTGATTCACACTCCAAGACTAATGAACAGACTGTTCAGGAGATGCTAAATTTAGCTATCAAGTACAATAAGGCAGTGCAAGAGGAGGATGAGCTGCCGCCAGAAAAGCTTGCAATTGCTAACGTGGGAAGGCAAGATGCAAAGAAGCACCTTGAAGAGCATGTTTCCAATTTGATGTCTTCAAACATAGTTCAGACATTAGGAATGATGCTTGATACAGTTGTATTTTAG 939 0.4452 MSGMERLQRMFAGAGGALGHPPPDSPTLDSAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDSHSKTNEQTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2601 312 Pfam Maintenance of mitochondrial structure and function 176 299 IPR024969 -
Dere05g2601 312 Gene3D Cytidine Deaminase, domain 2 20 237 - -
Dere05g2601 312 SMART pad1_6 33 168 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dere05g2601 312 SUPERFAMILY JAB1/MPN domain 34 171 - -
Dere05g2601 312 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 28 309 - -
Dere05g2601 312 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 30 141 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dere05g2601 312 FunFam 26S proteasome non-ATPase regulatory subunit 23 237 - -
Dere05g2601 312 CDD MPN_RPN11_CSN5 23 289 - -
Dere05g2601 312 ProSiteProfiles MPN domain profile. 34 169 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2601 Dere-ChrDere05 36576838 36579429 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2601 05 36576838 36579429 Dere05g2601 05 36576838 36579429 ECH