Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2528 ATGCCAAACAGCCAAAACCAAAGGCCAAAGCGGAGACCAGAGAGCACTCACTGGGAGAGATCCTCTCTCTCTCTCTCTGCCCCTCTTCCAATTCCACACCCTTTGCGCCAATCAACGACCCCACAATCAAATTTCCCTCTCTCTCTTTCTCCCTCCCTTAAACCTCTGCTTCTTACCATGCCAGCTTCCCCTTCAGAAAACCGAACCAAATGGAGGAAGCGCAAGAGGGAACCCCAAATTAATAGGCGGCAACAGAAGCACGAGGACGAGGACGACGAAGAAGAAGAGCCCAATGGCGAGGACGACCACCTCGAACGCGAGGATGATTCCGAGGACCAAACCCAACACCCTAATCCCCAATCCGGTTCTAATTCTCAAGCGCAGCTCGAGATCGAGGTCTTGTCCGACGATGGAGTTCAAATTTCCCAGTTCCCTAGAGTGATCAAGCGCACTGTAAATCGCCCTCACGCGTCCGTCATGGCAATTGTTGCTTTGGAGCGGGCCAATGAGTCTGGAGACAACAAGGGTCAGTTGCAGAATTCTCCATTGTTGGAGAATGTGTCGCATGGGCAGCTTCAGGCGCTGTCGTCCGTGCCCGCCGATAGTTCAGCTTTGGATCAGGACCGAAATGAGGGAAGTAGTTCGGCCTATGTGATCACCCCGCCCCCCGTACTTGAAGGCCGTGGCGTTGTTAAGCGGTTTGGGAGTAGGGTTCTTGTAGTTCCAATGCACTCAGAATGGTTTTCACCAGCTACAGTGCATCGGCTTGAGAGACAAGTGGTGCCACGTTTTTTCTCTGGAAAATCACCTGATCATACTCCAGAGAAGTACATGGAGTGTAGAAATTATATTGTTGCACGATATATGGAAGACCCGGTGAAGAGGGTTACTGTTTCTGATTGCCATGGATTGTTAGTTGGGGTAGATAACGAAGATTTAACTCGAATTTTCCGGTTCCTTGATCACTGGGGAATCATCAATTACTGTGCTCAGGTGCCAAGTCATGACCCTTGTAATGATGAGTCCTACCTGAAGGATGAGACAAGTGGCGAGATCTGTGTGCCATCAGATGCCTTAAAATCCATAGATAGTTTAATCAAATTTGAGAAGCCCAATTGTAAACTCAAAGCAGATGAAATTCATTCGTCATTGACAACTCACAATGCCGATATGTCTGATTTGGAGGACAGAATAAGAGAGCATCTATCTGAAAATCATTGCAATCATTGTTCTCGTCCTCTTCCTGCTGTATACTATCAGTCACAAAAAGAGGCTGATATTCTACTCTGTACTGATTGTTTCCATGATGGGAGGTTTGTCATTGGTCATTCAAGTATAGATTTTATGAGGGTTGATTCAACAAGAGATTATGGTGATCCAGATGGGGATAGTTGGACTGATCAAGAAACCTTGCTGTTGCTTGAGGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGTATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGAAAACTGGAAAATATCAATGTTCCGAGATTGTCATCCAATATATCATTTAGGGATGATTGTGGAAGATCGTGTTCAAATTTAGATGGAGATTTAGCAGGACCTACTCAGAGCATTGATCCTGTCAGCAGGCTTCCTTTCGCAAATTCTGAAAATCCTGTTATGGCTCTGGTTGCCTTTTTGGCCTCTGCTATTGGACCAAGAGTAGCTGCTGCTTGTGCTCATGCAGCATTAGCAGAATTGTCGCAGGACAATTGTGGTAGTACGTCACAGATGGAAGCACCAGGGCATGGTAATAGGATGAACTTGGAAAGCACACATAGTAGAGATGGTGGTCCTCTTGGAGAAATTGCAAACTCAAATCAGCATGATGAGGATGAGGCAAAAGTACTTGGTTTGCGGGGTCCCAATGAGGGTGAGGTCATCCCTCTATCTGCTGAGAAAGTTAAAGATGCTGCCAAGGCAGGCTTGTCTGCTGCAGCAATGAAAGCTAAACTGTTTGCCGATCATGAAGAAAGAGAAATTCAGAGGCTATGTGCTAATATTATTAACCATCAGTTGAAAAGATTGGAATTGAAGCTCAAGCAGTTTGCTGAAATTGAAACATTGTTGATGAAAGAATGTGAACAAGTGGAGAAGGCAAGGCAAAGGTTTGCTGCCGAACGTTCCCGCATTTTATCAGCATGGCTTGGATCTGGTGTAGCCACAAGCACATCAGGTGTTGGTCCTTCCACAGTTAGCAACAATAATGGCAATGGTAGGCAACAAATGACATTTGGTTCTCCTTCACAGCCTAGTGTCTCGGGGTACAGCAGTGGCCAGCCAGTTCATCCACATATGTCCTTTGTCCCACGGCCTTCCATGTTTGGCTTAGGGCAAAGGTTACCGCTTTCTATGATACAACAATCACAGTCAACTTCTTCAAATCCCATGTTCAAAGCCCCTGGGAATGTGCAGCCTAGTGCCAATCATCCATTGTTGAGGCCTGTATCAGGTACTAACTCTGGTTTAGGTTAA 2547 0.4586 MPNSQNQRPKRRPESTHWERSSLSLSAPLPIPHPLRQSTTPQSNFPLSLSPSLKPLLLTMPASPSENRTKWRKRKREPQINRRQQKHEDEDDEEEEPNGEDDHLEREDDSEDQTQHPNPQSGSNSQAQLEIEVLSDDGVQISQFPRVIKRTVNRPHASVMAIVALERANESGDNKGQLQNSPLLENVSHGQLQALSSVPADSSALDQDRNEGSSSAYVITPPPVLEGRGVVKRFGSRVLVVPMHSEWFSPATVHRLERQVVPRFFSGKSPDHTPEKYMECRNYIVARYMEDPVKRVTVSDCHGLLVGVDNEDLTRIFRFLDHWGIINYCAQVPSHDPCNDESYLKDETSGEICVPSDALKSIDSLIKFEKPNCKLKADEIHSSLTTHNADMSDLEDRIREHLSENHCNHCSRPLPAVYYQSQKEADILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGDPDGDSWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPRLSSNISFRDDCGRSCSNLDGDLAGPTQSIDPVSRLPFANSENPVMALVAFLASAIGPRVAAACAHAALAELSQDNCGSTSQMEAPGHGNRMNLESTHSRDGGPLGEIANSNQHDEDEAKVLGLRGPNEGEVIPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVEKARQRFAAERSRILSAWLGSGVATSTSGVGPSTVSNNNGNGRQQMTFGSPSQPSVSGYSSGQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSQSTSSNPMFKAPGNVQPSANHPLLRPVSGTNSGLG 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2528 848 PANTHER SWI/SNF COMPLEX-RELATED 128 735 - -
Dere05g2528 848 FunFam SWI/SNF complex subunit SMARCC2 isoform c 245 333 - -
Dere05g2528 848 MobiDBLite consensus disorder prediction 596 632 - -
Dere05g2528 848 SMART sant 461 509 IPR001005 -
Dere05g2528 848 ProSiteProfiles Myb-like domain profile. 464 507 IPR001005 -
Dere05g2528 848 MobiDBLite consensus disorder prediction 834 848 - -
Dere05g2528 848 ProSiteProfiles SWIRM domain profile. 239 337 IPR007526 GO:0005515
Dere05g2528 848 CDD SANT 464 506 IPR001005 -
Dere05g2528 848 MobiDBLite consensus disorder prediction 810 848 - -
Dere05g2528 848 Gene3D - 461 511 - -
Dere05g2528 848 Pfam Myb-like DNA-binding domain 464 506 IPR001005 -
Dere05g2528 848 Coils Coil 384 404 - -
Dere05g2528 848 SUPERFAMILY Homeodomain-like 238 330 IPR009057 -
Dere05g2528 848 ProSiteProfiles Zinc finger ZZ-type profile. 402 456 IPR000433 GO:0008270
Dere05g2528 848 Gene3D - 245 332 IPR036388 -
Dere05g2528 848 MobiDBLite consensus disorder prediction 1 125 - -
Dere05g2528 848 MobiDBLite consensus disorder prediction 810 826 - -
Dere05g2528 848 SUPERFAMILY Homeodomain-like 462 515 IPR009057 -
Dere05g2528 848 MobiDBLite consensus disorder prediction 90 108 - -
Dere05g2528 848 MobiDBLite consensus disorder prediction 596 616 - -
Dere05g2528 848 MobiDBLite consensus disorder prediction 199 217 - -
Dere05g2528 848 ProSiteProfiles SANT domain profile. 460 511 IPR017884 -
Dere05g2528 848 MobiDBLite consensus disorder prediction 747 785 - -
Dere05g2528 848 Pfam SWIRM-associated region 1 665 735 IPR032451 -
Dere05g2528 848 MobiDBLite consensus disorder prediction 199 218 - -
Dere05g2528 848 FunFam SWI/SNF complex subunit SMARCC2 isoform C 461 511 - -
Dere05g2528 848 Pfam SWIRM domain 242 328 IPR007526 GO:0005515
Dere05g2528 848 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2528 Dere-ChrDere05 35811502 35817520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2528 407 503 EF-hand Containing Proteins AT3G07740 33.019 5.05e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2528 05 35811502 35817520 Dere05g2528 05 35811502 35817520 ECH