Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2523 ATGGATGTGAGAAGCAGGGGAGTCGCGTTGCTTCTCTTATGCTTTCTGGGACTGCCTGCTATTTTCCCTGTGTGTTTCTCAGCAGCCAACCTACCCGGTTTCACCAAAAAGGCCCCACAACCAACTTCTAACAATCGCATCGGCTCCTCGGCTGTTTTCCAGGTTCGAGGGAATGTATATCCCCTCGGGTATTATTCAGTTTCCATTAACATCGGCAATCCCCCTAAACCATATGAACTTGACATTGACTCTGGAAGCGACCTCACTTGGGTACAGTGCGACGCACCATGTAAAGGCTGCACCAAGCCTCGGGATCAACTTTACAAACCCATCGGGGCGAACCTAGTGCAGTGTGGGGACCAGTTATGTGGAGGAGTGCATTTATCTGCGACACATAAATGTGAGTCCCCTAAAGAACAATGCGACTATGAGGTTGAATACGCCGACCATGGCTCGTCCCTGGGCGTGCTGGTCCGAGACTACATTCCTCTTCGCTTCACCAACGGCTCAGTCCTACGTCCAAGGGTGGCCTTTGGGTGTGGATATGATCAAACGTATTCAGGTCCAATATCCCAACCTTCTACAGCCGGAGTTCTAGGGCTTGGGAACGGGAAGGCAAGTTTTTTGTCACAGCTTTCGTCTCTGGGCCTGGTCCGAAATGTGGTGGGCCACTGCCTTAGTGGGCGAGGAGGAGGCTTTTTATTTTTGGGAGATGGTCTCATTCCCTCGTCTGGAATTTCTTGGACGCCAATTTTGCCTGCTTCCTCAATAGAACACTATATCTCAGGACCAGCTGATCTGTTTTTCAATGCAAAGCCAACTACTGTAAAGGGTCTTCAAGTTATCTTTGATAGTGGGAGCTCCTACACGTACTTTAATTCCCAAGCTTACCTAGCCACTGTTAATATGATATCTGATGATTTAAAGGGAAAGCAATTGAGTAGAGAAACTACAGATAAATCCCTTCCAGTTTGCTGGAAGGGATCAAAGCCATTCAAATCTTTACGTGACGTCAGCAACTTTTTTAAGCCCTTAACGCTGAGCTTCACGAAGACGAAGAATGTGCAGCTGCAAGTGCCACCATCAGCTTATCTCATTCTTTCTAAATACGGCAATGTCTGCTTGGGGATTCTAAACGGCACTGAAGCTGGACTGGGAAATCTTAACATAATTGGAGACATCTTTTTACAAGATAAAATGGTGATTTATGACAACGAGAAGAAGCAGATTGGATGGGTTTCTGCCAATTGTGATAGGCTTCCCAAATAG 1269 0.4697 MDVRSRGVALLLLCFLGLPAIFPVCFSAANLPGFTKKAPQPTSNNRIGSSAVFQVRGNVYPLGYYSVSINIGNPPKPYELDIDSGSDLTWVQCDAPCKGCTKPRDQLYKPIGANLVQCGDQLCGGVHLSATHKCESPKEQCDYEVEYADHGSSLGVLVRDYIPLRFTNGSVLRPRVAFGCGYDQTYSGPISQPSTAGVLGLGNGKASFLSQLSSLGLVRNVVGHCLSGRGGGFLFLGDGLIPSSGISWTPILPASSIEHYISGPADLFFNAKPTTVKGLQVIFDSGSSYTYFNSQAYLATVNMISDDLKGKQLSRETTDKSLPVCWKGSKPFKSLRDVSNFFKPLTLSFTKTKNVQLQVPPSAYLILSKYGNVCLGILNGTEAGLGNLNIIGDIFLQDKMVIYDNEKKQIGWVSANCDRLPK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2523 422 PANTHER ASPARTYL PROTEASES 57 411 IPR001461 GO:0004190|GO:0006508
Dere05g2523 422 Gene3D Acid Proteases 41 238 IPR021109 -
Dere05g2523 422 Pfam Xylanase inhibitor C-terminal 278 412 IPR032799 -
Dere05g2523 422 Pfam Xylanase inhibitor N-terminal 65 238 IPR032861 -
Dere05g2523 422 FunFam Aspartyl protease family protein 41 238 - -
Dere05g2523 422 ProSiteProfiles Peptidase family A1 domain profile. 65 413 IPR033121 -
Dere05g2523 422 SUPERFAMILY Acid proteases 57 420 IPR021109 -
Dere05g2523 422 PRINTS Pepsin (A1) aspartic protease family signature 71 91 IPR001461 GO:0004190|GO:0006508
Dere05g2523 422 PRINTS Pepsin (A1) aspartic protease family signature 389 404 IPR001461 GO:0004190|GO:0006508
Dere05g2523 422 PRINTS Pepsin (A1) aspartic protease family signature 281 292 IPR001461 GO:0004190|GO:0006508
Dere05g2523 422 FunFam Aspartic proteinase Asp1 isoform A 242 421 - -
Dere05g2523 422 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 80 91 IPR001969 GO:0004190|GO:0006508
Dere05g2523 422 Gene3D Acid Proteases 242 420 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2523 Dere-ChrDere05 35750934 35753398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2523 49 422 Miscellaneous Gene Families AT1G44130 60.000 9.65e-168 474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2523 05 35750934 35753398 Dere05g2523 05 35750934 35753398 ECH