Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2430 ATGGGTTCTTTTTTAAGCATGGCTAGTACCAAGTCCGATAAAAGTGAGGGTGATGAAGTCTTTCAGAATGAGATCTGCAAGAGACGAAGAACGTCTTCTAGCTTTGATGAGGAGAGTCCAAGATTGATTCCAAATCTCCCGGATGAGTTATCACTTCAGATTATTGCCAGACTTCCTAGGATTTGCTACGTCAATTTAAGGTTGGTGTCACGGAAGTGGAAGGCTACTATCATGAGTTCTGAACTATATAAATTAAGAAAAGAACTTGGAACAACTGAAGAGTGGCTTTATCTGTTGATTAAGGTTGGAGAAAGTAAGCTTATATGGCATGCTTTAGACCCTTGTTCGCAAAAATGGCAGAGGCTGCCTGCTATGCCCAATTTTGTTAATGAAGATGAATCTAGAAAGGGTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAAGGTATTAGAATTGCTGAAGTTATTAGAGGTTTGCTCGGACAGAAGGATGCGTTAGATGAAATGCCCTTCTGCGGTTGCTCCATTGGAGTAGTTGATGGATGTCTCTATGTTCTAGGTGGATTCTCTAGAGCTTCAACTATGAGATGTGTGTGGAGATTTGATCCAATACAAAATACATGGAGCAAGGTGACTTCTATGTCTACAGGCAGAGCATACTGTAAGACAGGCATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAGGGTCAAGCTGGACTGATTCCTCTTCAGTCCGCTGAAGTTTTTGATCCCTCTACTGATACATGGTCCCATGTTCCTAGCATGCCTTTCTCAAAAGCTCGAGTCCTGCCCACTGCTTTTTTGGCTGACATGTTAAGGCCTATTGCCACAGGATTGACTTCATACATGGGAAGGTTATGTGTCCCCCAAAGTTTGTATTCATGGCCCTTTTTTGTTGATGTTGGTGGAGAAATCTATGATCCTGAAACTAATTCATGGATGGAAATGCCTATAGGAATGGGTGAGGGTTGGCCAGCTCGGCAGGCCGGTACTAAATTGAGTGTTGTGGTGGATGGGGAGTTATATGCTTTTGATCCTTCTAATTCTCTGGAAAGTGGAAAGATCAAGGTATATGATCAAGGAGAAGATGCATGGAAAGTAGTTATTGGGAAAGTTCCCATATATGATTCTGCAGATTCAGAATCTCCATATCTACTTGCTGGTTTCCATGGAAAGCTTAATGTCATTACAAAAGATGCCAATCATGATATTGCTGTTCTTCAGGCTGACCTGCGCCATAATTTCGATTCTTCTCCTTCAATCTCAACTCCTCTTTCACCCAACTCTTGCCATGAAGTTCCAGAACCAGGTTCTGATTCTGATGCGGTTGTTTGGAAGGTAGTTGCCAATAGGGATTTTGGGCCAGCTGAATTGGTCAGTTGCCAAGTGATTGATATTTAA 1431 0.4214 MGSFLSMASTKSDKSEGDEVFQNEICKRRRTSSSFDEESPRLIPNLPDELSLQIIARLPRICYVNLRLVSRKWKATIMSSELYKLRKELGTTEEWLYLLIKVGESKLIWHALDPCSQKWQRLPAMPNFVNEDESRKGSSRLWMWNMVEGIRIAEVIRGLLGQKDALDEMPFCGCSIGVVDGCLYVLGGFSRASTMRCVWRFDPIQNTWSKVTSMSTGRAYCKTGILNNKLYVVGGVSQGQAGLIPLQSAEVFDPSTDTWSHVPSMPFSKARVLPTAFLADMLRPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWMEMPIGMGEGWPARQAGTKLSVVVDGELYAFDPSNSLESGKIKVYDQGEDAWKVVIGKVPIYDSADSESPYLLAGFHGKLNVITKDANHDIAVLQADLRHNFDSSPSISTPLSPNSCHEVPEPGSDSDAVVWKVVANRDFGPAELVSCQVIDI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2430 476 Gene3D - 104 385 IPR015915 GO:0005515
Dere05g2430 476 Gene3D - 41 96 - -
Dere05g2430 476 SMART kelc_smart 182 228 IPR006652 GO:0005515
Dere05g2430 476 SMART kelc_smart 229 279 IPR006652 GO:0005515
Dere05g2430 476 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Dere05g2430 476 Pfam F-box domain 44 83 IPR001810 GO:0005515
Dere05g2430 476 SUPERFAMILY Kelch motif 103 384 IPR015915 GO:0005515
Dere05g2430 476 PANTHER OS02G0202900 PROTEIN 20 475 IPR045887 -
Dere05g2430 476 Pfam Kelch motif 218 266 IPR006652 GO:0005515
Dere05g2430 476 Pfam Kelch motif 170 215 IPR006652 GO:0005515
Dere05g2430 476 MobiDBLite consensus disorder prediction 428 447 - -
Dere05g2430 476 SUPERFAMILY F-box domain 39 109 IPR036047 GO:0005515
Dere05g2430 476 CDD F-box_AtAFR-like 42 86 - -
Dere05g2430 476 SMART fbox_2 46 86 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2430 Dere-ChrDere05 34725234 34726664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2430 36 270 Miscellaneous Gene Families AT4G33900 26.033 3.78e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2430 05 34725234 34726664 Dere05g2430 05 34725234 34726664 ECH