Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2396 ATGGTTGGTACTGCCACGCTGTGGCACATAACAGTGCAGCAGTCGCCTAGGGAGCGCACTGAGCCTTTGCACTCTTCATTTTCGCCATCCTCTTCTTGCCCGGAAGAGAAGCCTTGGTCAATTCTCCACTCTTTTAGCTAGAACAAGAATATGGATGAAGAGTGGGGCACGTGGTGGAGGAATGGATTTCCAAACACGCCATATCCCAATCTTCATCATCGTCATCGCCGCCATGAGCATTTGCCGATTCGTTCCCCCGTATGGAGGGTCTCTCACGCATCCCATTCTTCTGCGTCAACTTCTTTTTTTAATGGGCTTCATGTTTCGGCTCATAGTTCCTCATATTCAGCTCCATTTCAGGATAGCAAACTTCTGACGCCCAACGATCACGTCACAACTAAATTGTTGTTGGACTCAGAGTCGTCAGATTTTTACACTGGGAAGAATATCAGTGATAATCAGGTGGCTGATCTGGACCTGTCTCAGGATTTCTATAGAATGAATATTATGGATGGACAGGGAAATGGTAACAAAAGCAATGGACGTGAAACGGACTCCAACGGATTTGGATTTGACGCCTGTTCTTTTGATGCAAGTATTCCCGGCGTTACTGAAACACGTAGCCCTCATGAAGATTTTTGCAATGAAGTTCCCATTCCCAATTATGAGTGTATCTCATCGTCTACTTGGGGAGTTTCACCAAGTTTGGTTGCTGATATGAAGTGGTCATTCCCTGCCTCGGGGAAGAAATACACTTCTTCCCTCGGTCATGATCAATCCAGCGCTTTGAATTTGGGCTCTAGTTGGAACATGAACCAAAAATATCATCGAATGGCGCACTGCAGGAAACAGGGGAGCAGTAGCTATGATGGAGAAGTTCAATTGCAGAAGCCATCTATTATTAGCTCCTACTTTTGTGATGGAATAACTAGCTCACAAGCTTGTGAATTGGATTTCGATGGAAGCAGGGCAGTCAAAAACCCCCTAAGATTCTCTCAAATTATGCACTCCATGCTTTCTTCAAATCAGGATTCTCCATCCTATTATTGTCCAACAACAAAAGATGAAACAATGGGAACTGCCACCTTTGAGCTGCCTGAATTTCTCTCGTCCGAAAGAGCTAGTGGCGATCCAGAGGCATTTCGATGTGACAATAGTTTTATCATACAAGGAAAAGATATAAATTATTATGTTGATAACGAATGCAATTCTTTGAGGGATAGCAAAATGAATTCGCACAATAAGATTGCAATCGAAACTGCTGGAGAAAAAGTTTCTAGACACAATTCTTATACTCCTGGTAGTCAAATTTGTGGTAATAAGGGCAGTCTTGTTGGTGATTTTTCATTGCCCTCGCTACTGACTTTCTATTCTTTGGCTGAGTACCAAGGTTACGTTTTCAATCTGGCAAAGGATCAGAACGGCTGTCGCTTCTTACAAAGGATGGTTGATAAGGGAAGCTATAGAGATATGCATATAGTATTTGAGGGAATCATAGATAATGTTATTGAACTTATGATGGACCCTTTTGGCAATTATCTTGTGCAGAAGTTGCTGGATGTATGCAGAGAAGAGCAGAAATTGCAGATTGTTTGCATGGTGACTAAAGAACCTGGGCAGCTTCTCAGAATATCTTTGAACACACATGGCACACGCGTGGTACAGAAGTTGATTGAGACTCTCAATTCTAGGAAGCAAATTTCATTAATGAAGTCAGCCCTTCAAGTAGGTTTTCTTGATCTCATTAAGGATCTGAATGGAAATCATGTAATACAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATGAGTTTATTTTTTATGCTGCTGCAAAGTTTTGTGCTGACATAGCTACTCATCGACATGGATGTTGTGTATTGCAACGTTGCATTGATCATTCAATGGGCAAATATCGAGATAAGCTGGTTACAGAAATATGTAGACACGGGCTTCTCCTTGCTCAAGATTCCTTTGGAAATTATGTTGTTCAGTATGTAATAGAGATGGAGATCCCAACTGCCTCAGCCAAGCTGATTTCTCAGTTCAAAGGGAACTATATAAACCTCTCTACGCAAAAATTTAGCAGTCATGTGGTTGAAAAATGCCTTAAGCATGTTGCAGAGAGCAGATCGAGGATCGTCCGAGAATTGCTGTCTGCACCTCACTTCGAACAGTTGTTGCAAGACCCATTTGCTAACTATGTCATTCAGTCTGCTCTTGCAGTGACAAAGGGTTCTCTTCATGCATCTTTGATCGAAGCAGTTCGCCCGTACAAAATCTTGCGCACCAGCCCATATTGCAAGAGGATTTTCTCGGGAAATCTACTCAAGAAGTGA 2337 0.424 MVGTATLWHITVQQSPRERTEPLHSSFSPSSSCPEEKPWSILHSFSXNKNMDEEWGTWWRNGFPNTPYPNLHHRHRRHEHLPIRSPVWRVSHASHSSASTSFFNGLHVSAHSSSYSAPFQDSKLLTPNDHVTTKLLLDSESSDFYTGKNISDNQVADLDLSQDFYRMNIMDGQGNGNKSNGRETDSNGFGFDACSFDASIPGVTETRSPHEDFCNEVPIPNYECISSSTWGVSPSLVADMKWSFPASGKKYTSSLGHDQSSALNLGSSWNMNQKYHRMAHCRKQGSSSYDGEVQLQKPSIISSYFCDGITSSQACELDFDGSRAVKNPLRFSQIMHSMLSSNQDSPSYYCPTTKDETMGTATFELPEFLSSERASGDPEAFRCDNSFIIQGKDINYYVDNECNSLRDSKMNSHNKIAIETAGEKVSRHNSYTPGSQICGNKGSLVGDFSLPSLLTFYSLAEYQGYVFNLAKDQNGCRFLQRMVDKGSYRDMHIVFEGIIDNVIELMMDPFGNYLVQKLLDVCREEQKLQIVCMVTKEPGQLLRISLNTHGTRVVQKLIETLNSRKQISLMKSALQVGFLDLIKDLNGNHVIQRCLQCLSCQDNEFIFYAAAKFCADIATHRHGCCVLQRCIDHSMGKYRDKLVTEICRHGLLLAQDSFGNYVVQYVIEMEIPTASAKLISQFKGNYINLSTQKFSSHVVEKCLKHVAESRSRIVRELLSAPHFEQLLQDPFANYVIQSALAVTKGSLHASLIEAVRPYKILRTSPYCKRIFSGNLLKK 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2396 778 ProSiteProfiles Pumilio RNA-binding repeat profile. 609 644 IPR001313 GO:0003723
Dere05g2396 778 ProSiteProfiles Pumilio RNA-binding repeat profile. 645 680 IPR001313 GO:0003723
Dere05g2396 778 ProSiteProfiles Pumilio RNA-binding repeat profile. 533 571 IPR001313 GO:0003723
Dere05g2396 778 ProSiteProfiles Pumilio RNA-binding repeat profile. 461 496 IPR001313 GO:0003723
Dere05g2396 778 CDD Pumilio 462 772 IPR033712 GO:0003723
Dere05g2396 778 ProSiteProfiles Pumilio RNA-binding repeat profile. 497 532 IPR001313 GO:0003723
Dere05g2396 778 FunFam Pumilio homolog 9 452 778 - -
Dere05g2396 778 SMART pum_5 681 715 IPR001313 GO:0003723
Dere05g2396 778 SMART pum_5 645 680 IPR001313 GO:0003723
Dere05g2396 778 SMART pum_5 536 571 IPR001313 GO:0003723
Dere05g2396 778 SMART pum_5 609 644 IPR001313 GO:0003723
Dere05g2396 778 SMART pum_5 497 532 IPR001313 GO:0003723
Dere05g2396 778 SMART pum_5 718 753 IPR001313 GO:0003723
Dere05g2396 778 SMART pum_5 573 608 IPR001313 GO:0003723
Dere05g2396 778 SMART pum_5 461 496 IPR001313 GO:0003723
Dere05g2396 778 MobiDBLite consensus disorder prediction 7 31 - -
Dere05g2396 778 SUPERFAMILY ARM repeat 459 771 IPR016024 -
Dere05g2396 778 Gene3D - 451 775 IPR011989 -
Dere05g2396 778 MobiDBLite consensus disorder prediction 1 31 - -
Dere05g2396 778 ProSiteProfiles Pumilio RNA-binding repeat profile. 573 608 IPR001313 GO:0003723
Dere05g2396 778 Pfam Pumilio-family RNA binding repeat 614 647 IPR001313 GO:0003723
Dere05g2396 778 Pfam Pumilio-family RNA binding repeat 722 741 IPR001313 GO:0003723
Dere05g2396 778 Pfam Pumilio-family RNA binding repeat 652 668 IPR001313 GO:0003723
Dere05g2396 778 Pfam Pumilio-family RNA binding repeat 501 533 IPR001313 GO:0003723
Dere05g2396 778 Pfam Pumilio-family RNA binding repeat 578 607 IPR001313 GO:0003723
Dere05g2396 778 Pfam Pumilio-family RNA binding repeat 686 718 IPR001313 GO:0003723
Dere05g2396 778 Pfam Pumilio-family RNA binding repeat 541 564 IPR001313 GO:0003723
Dere05g2396 778 Pfam Pumilio-family RNA binding repeat 466 498 IPR001313 GO:0003723
Dere05g2396 778 ProSiteProfiles Pumilio RNA-binding repeat profile. 681 719 IPR001313 GO:0003723
Dere05g2396 778 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 193 771 - -
Dere05g2396 778 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 440 778 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2396 Dere-ChrDere05 34398822 34405139 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2396 05 34398822 34405139 Dere05g2396 05 34398822 34405139 ECH