Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2383 ATGTCAGGTGGCGGTTGTAGCATAGTGTGGTTCAGGAGAGATCTGAGGGTAGAGGATAATCCAGCACTGACGGCAGGAATGAGAGCAGGAGCGGTGGTGGCACTTTTTATATGGGCACCTGAAGAAGAGGGCCAATTCCAACCCGGAAGGGTGTCCAGATGGTGGCTCAAACAGAGTTTGGCTCACCTTGATTCTTCTTTGAGGAATCTTGGCACTCCTCTTATCACCAAGCGATCCACTGACAGTGTTTCTTCTCTTTTAGAGGTTGTCAAGTCCACTGGAGCTACTCAACTCTTCTTTAACCACTTATACGATCCTCTATCACTTGTTAGAGATCACCGGGCAAAGGAGGTGCTGACTGCTCAAGGCATAGCCGTGCGTTCCTTCAATGCGGATTTATTGTATGAACCATGGGATGTGAATGATGCCCATGGCCAGCCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCAGAGGCACCTCTTCTCCCACCTAAAAGGATTCTTGCAGGTGATGTATCAAGGTGCCCTTCTGATACGTTGGTGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCTCGAGCATGGTCACCTGGGTGGAGCAACGCTGACAAGGCCTTAACGACATTCATAAATGGCCCATTGATTGAGTACTCAAAAAATCGCAGAAAAGCTGACAGTGCCACAACCTCATTTCTTTCGCCCCATCTACATTTTGGAGAGGTGAGTGTCAAAAAGGTCTTCCATCTTGTCCGAATTAAGCAAGTTTTATGGGCCAATGAAGGGAACAAGGCTGGTGAAGAAAGCGTGAACTTGTTTCTCAAGTCTATTGGTCTCAGAGAGTATTCAAGGTACATCAGTTTCAACCATCCATATAGTCACGAGAGGCCTCTTCTGGGCCACCTCAAGTTCTTTCCATGGGTAGTAAATGAAGGCTATTTTAAGGCATGGAGACAAGGAAGAACTGGGTACCCCTTGGTGGATGCTGGGATGAGAGAGCTGTGGGCCACTGGTTGGCTGCATGATCGGATACGTGTTGTAGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGACACTCTCTTGGATGCGGATCTTGAGAGCGATGCTCTTGGTTGGCAATACATATCTGGTACTCTCCCTGATGGCCGTGAATTTGACAGAATAGATAACCCACAGTTTGAGGGATACAAATTTGATCCACACGGAGAATATGTACGACGATGGCTTCCGGAACTTGCCAGACTACCAACTGAATGGATTCATCACCCCTGGAATGCACCAGAATCTGTACTTCAAGCTGCTGGAATCGAGCTGGGGTATAATTACCCTCTTCCCATTGTGGAAATTGATGCAGCAAAAGCCAGATTGGAAGAAGCATTATTAGAAATGTGGCAACATGAGACAGCTTCAAGAGCCGCAATTGAAAATGGAACAGAGGAAGGACTTGGAGACTCCTCTGAATCAACCCCTATTGCCTTTCCTCAGGACATACAAATGGAGGAAAGTCATGAACCTGTTAGGAACAATCCCCCTCCTGTTGCCCGGTCCTACGAGGATCAGATGGTCCCGAGCATCACTTCTCTAGTGAGAGTGGAAGAGGACGAAACTTCTTCAGATCTTCGAAACTCAACAGGGGATAGCAGAGCTGAAGTGCCAATCAATGTAAATGTACAGCAAAATGTAAGAGAGACATCGAACCAAGGGGTAGTACAGATTGTTTACAGAAATACTCAACTACAGAATACTGCAATGGCACTCAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCTAGTAGTAGTCGGAGAGAAAGGGATGGAGGTGTAGTTCCAGTATGGTCTCCTCCAACGTCTAGTTACTCGGAGCAATTTGTAGGAGATGAAAATGGTATAGGGGCTAGTCCATCTTACTTGCAGAGGCATCCTCAGTCTCACCAACTCATGAATTGGAGGCGGCTTCCTCAAACCGGGTAG 2037 0.4669 MSGGGCSIVWFRRDLRVEDNPALTAGMRAGAVVALFIWAPEEEGQFQPGRVSRWWLKQSLAHLDSSLRNLGTPLITKRSTDSVSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPEAPLLPPKRILAGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGYNYPLPIVEIDAAKARLEEALLEMWQHETASRAAIENGTEEGLGDSSESTPIAFPQDIQMEESHEPVRNNPPPVARSYEDQMVPSITSLVRVEEDETSSDLRNSTGDSRAEVPINVNVQQNVRETSNQGVVQIVYRNTQLQNTAMALRNAAEDSTAESSSSSRRERDGGVVPVWSPPTSSYSEQFVGDENGIGASPSYLQRHPQSHQLMNWRRLPQTG 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2383 678 Gene3D - 134 293 - -
Dere05g2383 678 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Dere05g2383 678 PRINTS DNA photolyase signature 352 370 IPR002081 -
Dere05g2383 678 PRINTS DNA photolyase signature 143 159 IPR002081 -
Dere05g2383 678 PRINTS DNA photolyase signature 332 348 IPR002081 -
Dere05g2383 678 PRINTS DNA photolyase signature 391 405 IPR002081 -
Dere05g2383 678 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Dere05g2383 678 Coils Coil 470 490 - -
Dere05g2383 678 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Dere05g2383 678 MobiDBLite consensus disorder prediction 609 678 - -
Dere05g2383 678 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Dere05g2383 678 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 487 IPR036134 -
Dere05g2383 678 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 177 IPR036155 -
Dere05g2383 678 Coils Coil 597 617 - -
Dere05g2383 678 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Dere05g2383 678 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Dere05g2383 678 MobiDBLite consensus disorder prediction 657 678 - -
Dere05g2383 678 Gene3D HUPs 8 206 IPR014729 -
Dere05g2383 678 Pfam DNA photolyase 7 163 IPR006050 -
Dere05g2383 678 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Dere05g2383 678 Pfam Blue/Ultraviolet sensing protein C terminal 511 623 IPR020978 -
Dere05g2383 678 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2383 Dere-ChrDere05 34214581 34218583 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2383 05 34214581 34218583 Dere05g2383 05 34214581 34218583 ECH